PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AT1G08290.1

Common Name

T23G18.15, WIP3

Organism

Arabidopsis thaliana

Taxonomic ID

3702

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis

Family

C2H2

Protein Properties

Length: 337aa MW: 38596 Da PI: 8.9538

Description

WIP domain protein 3

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AT1G08290.1	genome	TAIR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	16.7	2.1e-05	180	199	1	20
EEETTTTEEESSHHHHHHHH CS zf-C2H2 1 ykCpdCgksFsrksnLkrHi 20 + C++C+k+F+r n++ H+ AT1G08290.1 180 FACSICSKTFNRYNNMQMHM 199 78*****************9 PP
2	zf-C2H2	10.9	0.0014	265	287	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++Cgk k + ++H +++ AT1G08290.1 265 FSCGKCGKALAVKGDWRTHEKNC 287 89*****************9987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	5.79E-9	159	203	No hit	No description
Gene3D	G3DSA:3.30.160.60	1.4E-5	180	199	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profile	PS50157	10.45	180	207	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.17	180	202	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	182	202	IPR007087	Zinc finger, C2H2
SMART	SM00355	170	228	260	IPR015880	Zinc finger, C2H2-like
SuperFamily	SSF57667	3.64E-5	250	285	No hit	No description
Gene3D	G3DSA:3.30.160.60	9.3E-4	251	285	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SMART	SM00355	190	265	285	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	8.538	285	318	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003676	Molecular Function	nucleic acid binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0008270	Molecular Function	zinc ion binding

Plant Ontology ? help Back to Top
PO Term	PO Category	PO Description
PO:0000293	anatomy	guard cell

Sequence ? help Back to Top
Protein Sequence Length: 337 aa Download sequence Send to blast
MNSYETKGLS FESPSFIEWL KPQSSTTSSK SVLYRGKTRD AISRSNHHQS QMNMLERSLF 60 LYQPQEPLNT SIQCLPLLNK LMENNSQASD IKEENKDDVV TLQIGFPKYH RGSSEDGSDI 120 TFDHQKKPIK REIIEDGVVM MKKRRKMKFD EEIIDSDVEV CGKRFWIPSP AQIHVGPMQF 180 ACSICSKTFN RYNNMQMHMW GHGSEFRKGA DSLKGTIQPA AILRLPCYCC AEGCKNNINH 240 PRSKPLKDFR TLQTHYKRKH GSKPFSCGKC GKALAVKGDW RTHEKNCGKL WYCTCGSDFK 300 HKRSLKDHIR SFGSGHSPHP SLLFDGFEED TECVTTE

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	141	145	KKRRK

Expression -- Microarray ? help Back to Top
Source	ID	E-value
GEO	30680584	0.0
Expression Atlas	AT1G08290	-
AtGenExpress	AT1G08290	-

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcriptional regulator. {ECO:0000305\|PubMed:20541552}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	AT1G08290.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Phenotype -- Mutation ? help Back to Top
Source	ID
T-DNA Express	AT1G08290

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AF254448	0.0	AF254448.1 Arabidopsis thaliana WIP3 protein (WIP3) mRNA, complete cds.
GenBank	AK118851	0.0	AK118851.1 Arabidopsis thaliana At1g08290 mRNA for unknown protein, complete cds, clone: RAFL21-18-A22.
GenBank	AY090918	0.0	AY090918.1 Arabidopsis thaliana unknown protein (At1g08290) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_172306.1	0.0	WIP domain protein 3
Swissprot	Q9SGD1	0.0	ZWIP3_ARATH; Zinc finger protein WIP3
TrEMBL	A0A178WMP3	0.0	A0A178WMP3_ARATH; WIP3
STRING	AT1G08290.1	0.0	(Arabidopsis thaliana)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM239	28	237
Representative plant	OGRP410	15	97

Link Out ? help Back to Top
Phytozome	AT1G08290.1
Entrez Gene	837349
iHOP	AT1G08290
wikigenes	AT1G08290

Publications ? help Back to Top
Riechmann JL, et al. Arabidopsis transcription factors: genome-wide comparative analysis among eukaryotes. Science, 2000. 290(5499): p. 2105-10 [PMID:11118137] Sagasser M,Lu GH,Hahlbrock K,Weisshaar B A. thaliana TRANSPARENT TESTA 1 is involved in seed coat development and defines the WIP subfamily of plant zinc finger proteins. Genes Dev., 2002. 16(1): p. 138-49 [PMID:11782451] Seki M, et al. Functional annotation of a full-length Arabidopsis cDNA collection. Science, 2002. 296(5565): p. 141-5 [PMID:11910074] Yamada K, et al. Empirical analysis of transcriptional activity in the Arabidopsis genome. Science, 2003. 302(5646): p. 842-6 [PMID:14593172] Englbrecht CC,Schoof H,B Conservation, diversification and expansion of C2H2 zinc finger proteins in the Arabidopsis thaliana genome. BMC Genomics, 2004. 5(1): p. 39 [PMID:15236668] Appelhagen I, et al. Weird fingers: functional analysis of WIP domain proteins. FEBS Lett., 2010. 584(14): p. 3116-22 [PMID:20541552] Hanada K, et al. Functional compensation of primary and secondary metabolites by duplicate genes in Arabidopsis thaliana. Mol. Biol. Evol., 2011. 28(1): p. 377-82 [PMID:20736450] Zhou X,Graumann K,Evans DE,Meier I Novel plant SUN-KASH bridges are involved in RanGAP anchoring and nuclear shape determination. J. Cell Biol., 2012. 196(2): p. 203-11 [PMID:22270916] Pulido P,Toledo-Ortiz G,Phillips MA,Wright LP,Rodr Arabidopsis J-protein J20 delivers the first enzyme of the plastidial isoprenoid pathway to protein quality control. Plant Cell, 2013. 25(10): p. 4183-94 [PMID:24104567] Zhou X,Meier I Efficient plant male fertility depends on vegetative nuclear movement mediated by two families of plant outer nuclear membrane proteins. Proc. Natl. Acad. Sci. U.S.A., 2014. 111(32): p. 11900-5 [PMID:25074908] Zhou X,Groves NR,Meier I Plant nuclear shape is independently determined by the SUN-WIP-WIT2-myosin XI-i complex and CRWN1. Nucleus, 2015. 6(2): p. 144-53 [PMID:25759303]