PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro03_G13483

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

G2-like

Protein Properties

Length: 621aa MW: 70051.6 Da PI: 9.9833

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro03_G13483	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	93.3	2e-29	102	155	2	55
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 prlrWtp+LH++Fv+av+ LGG++ AtPk+il++m+ kg+t+ h+kSHLQ+YR+ Ro03_G13483 102 PRLRWTPDLHRSFVHAVDLLGGEDIATPKHILQTMNAKGITICHIKSHLQMYRS 155 8****************************************************7 PP
2	Myb_DNA-binding	43.4	8.1e-14	103	154	1	48
TSSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHT.TTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg...tWktIartmg.kgRtlkqcksrwqkyl 48 r+rWT++++ +v+av +lGg+ t+k I +tm+ kg t ++ks++q+y+ Ro03_G13483 103 RLRWTPDLHRSFVHAVDLLGGEdiaTPKHILQTMNaKGITICHIKSHLQMYR 154 89************************************************97 PP
3	G2-like	90.5	1.5e-28	345	394	2	51
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQ 51 prlrW+ +LH++Fv+ave+LGG+++AtPk il++m+vkgLt++h+kSHLQ Ro03_G13483 345 PRLRWSADLHRCFVHAVERLGGEDRATPKLILQIMNVKGLTISHIKSHLQ 394 8************************************************* PP
4	Myb_DNA-binding	44.6	3.4e-14	346	394	1	45
TSSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHT.TTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg...tWktIartmg.kgRtlkqcksrwq 45 r+rW+++++ +v+av++lGg+ t+k+I + m+ kg+t ++ks++q Ro03_G13483 346 RLRWSADLHRCFVHAVERLGGEdraTPKLILQIMNvKGLTISHIKSHLQ 394 89**********************************************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 621 aa Download sequence
MAMKRVELGE GNSLRGTPFS SLDNGEQKQL QFTPQFSSYG NHDMSIAASH EQMRVPHVNF 60 PAERMILPRP THRVNFRAER IILPRPTQLA AMVRPYVRSR APRLRWTPDL HRSFVHAVDL 120 LGGEDIATPK HILQTMNAKG ITICHIKSHL QMYRSMKHEE RVQDAAAREK MNVKGKASSS 180 NDSYLRYSII NNTTRLREDE IPIKPKSYII FTDILGGYST DNTRESNDQG VEVRGVRLSG 240 TGSSNVNDVN LELTLGLQCP FEAGKRLSLK DTMSNRAMKR IDRLSSSSSS LGNGEVYSPH 300 FGDHNMKIAA QRMTVYHTNL PADQISLLKS SSSTVVRPYV RSKVPRLRWS ADLHRCFVHA 360 VERLGGEDRA TPKLILQIMN VKGLTISHIK SHLQVSCSKF FFELAMSLSG RWEVQLGLLK 420 LALLSHVEVC HEQMYRSMKH EKRIQEAAMA AKKNDKAKAL DSSISYLLYP MKSTTTQPNY 480 CQRNDWRMRN MYNSAPYQSN RSSYYIEGID LKNTSTLAKW NNENSKQNSY IIFTDLVKRG 540 TDNALENNDQ GKVLSLVNAG CKSNHPKRED LSGDSESGGD IDATVSLSLK SSSKAYYSQR 600 FRLSDAGISD VNDVSLELTL T

Sequence ? help Back to Top

Protein Sequence Length: 621 aa Download sequence

MAMKRVELGE GNSLRGTPFS SLDNGEQKQL QFTPQFSSYG NHDMSIAASH EQMRVPHVNF  60
PAERMILPRP THRVNFRAER IILPRPTQLA AMVRPYVRSR APRLRWTPDL HRSFVHAVDL  120
LGGEDIATPK HILQTMNAKG ITICHIKSHL QMYRSMKHEE RVQDAAAREK MNVKGKASSS  180
NDSYLRYSII NNTTRLREDE IPIKPKSYII FTDILGGYST DNTRESNDQG VEVRGVRLSG  240
TGSSNVNDVN LELTLGLQCP FEAGKRLSLK DTMSNRAMKR IDRLSSSSSS LGNGEVYSPH  300
FGDHNMKIAA QRMTVYHTNL PADQISLLKS SSSTVVRPYV RSKVPRLRWS ADLHRCFVHA  360
VERLGGEDRA TPKLILQIMN VKGLTISHIK SHLQVSCSKF FFELAMSLSG RWEVQLGLLK  420
LALLSHVEVC HEQMYRSMKH EKRIQEAAMA AKKNDKAKAL DSSISYLLYP MKSTTTQPNY  480
CQRNDWRMRN MYNSAPYQSN RSSYYIEGID LKNTSTLAKW NNENSKQNSY IIFTDLVKRG  540
TDNALENNDQ GKVLSLVNAG CKSNHPKRED LSGDSESGGD IDATVSLSLK SSSKAYYSQR  600
FRLSDAGISD VNDVSLELTL T

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G02060.1	2e-28	G2-like family protein