PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AT2G02060.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | G2-like | ||||||||
Protein Properties | Length: 256aa MW: 28612.7 Da PI: 7.1376 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 104.8 | 5.1e-33 | 30 | 82 | 2 | 54 |
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYR 54 prlrWtp+LH++Fv+ave LGG+++AtPk +l++m+vkgLt++hvkSHLQ+YR AT2G02060.1 30 PRLRWTPDLHRCFVHAVEILGGQHRATPKLVLKMMDVKGLTISHVKSHLQMYR 82 8**************************************************** PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 5.1E-30 | 26 | 82 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 12.292 | 26 | 86 | IPR017930 | Myb domain |
TIGRFAMs | TIGR01557 | 5.4E-23 | 30 | 82 | IPR006447 | Myb domain, plants |
SuperFamily | SSF46689 | 5.02E-15 | 30 | 82 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 9.3E-9 | 31 | 82 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0016740 | Molecular Function | transferase activity |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0000084 | anatomy | plant sperm cell | ||||
PO:0000293 | anatomy | guard cell |
Sequence ? help Back to Top |
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Protein Sequence Length: 256 aa Download sequence Send to blast |
MGKSSGRNGN GSFNGNKFHG VRPYVRSPVP RLRWTPDLHR CFVHAVEILG GQHRATPKLV 60 LKMMDVKGLT ISHVKSHLQM YRGGSKLTLE KPEESSSSSI RRRQDSEEDY YLHDNLSLHT 120 RNDCLLGFHS FPLSSHSSFR GGGGGRTKEQ QTSESGGYDD DADFLHIKKM NDTTTFLSHH 180 FPKGTEEWRE QEHEEEEEDL SLSLSLNHHH WRSNGSSVVS ETSEAAVSTC SAPFVSKDCF 240 GSSKIDLNLS ISLLGS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4r_A | 5e-18 | 31 | 82 | 3 | 54 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_B | 5e-18 | 31 | 82 | 3 | 54 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_C | 5e-18 | 31 | 82 | 3 | 54 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_D | 5e-18 | 31 | 82 | 3 | 54 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
At.41520 | 0.0 | silique |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | AT2G02060 | |||||
AtGenExpress | AT2G02060 | |||||
ATTED-II | AT2G02060 |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription factor. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | AT2G02060.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
T-DNA Express | AT2G02060 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK229511 | 0.0 | AK229511.1 Arabidopsis thaliana mRNA for hypothetical protein, complete cds, clone: RAFL17-14-B12. | |||
GenBank | BT008556 | 0.0 | BT008556.1 Arabidopsis thaliana clone U50358 unknown protein (At2g02060) mRNA, complete cds. | |||
GenBank | BT008699 | 0.0 | BT008699.1 Arabidopsis thaliana clone RAFL17-14-B12 (R50358) unknown protein (At2g02060) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001324905.1 | 0.0 | Homeodomain-like superfamily protein | ||||
Refseq | NP_565281.2 | 0.0 | Homeodomain-like superfamily protein | ||||
Swissprot | Q700D9 | 3e-66 | MYBF_ARATH; Putative Myb family transcription factor At1g14600 | ||||
TrEMBL | Q7X887 | 0.0 | Q7X887_ARATH; Glycosyltransferase | ||||
STRING | AT2G02060.1 | 0.0 | (Arabidopsis thaliana) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4694 | 18 | 52 | Representative plant | OGRP285 | 15 | 123 |
Link Out ? help Back to Top | |
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Phytozome | AT2G02060.1 |
Entrez Gene | 814737 |
iHOP | AT2G02060 |
wikigenes | AT2G02060 |
Publications ? help Back to Top | |||
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