PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro03_G12091

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

WRKY

Protein Properties

Length: 723aa MW: 77940.5 Da PI: 6.2629

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro03_G12091	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	101.8	4.1e-32	300	357	2	60
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 +DgynWrKYGqK+vkgse+prsYY+Ct+++C+vkkkvers+ +++++ei+Y+g Hnh+k Ro03_G12091 300 EDGYNWRKYGQKQVKGSEYPRSYYKCTHPNCQVKKKVERSH-EGHITEIIYKGAHNHPK 357 7**************************************.*************85 PP
2	WRKY	102.8	1.9e-32	516	574	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+WrKYGqK+vkg+++prsYY+Ct agC+v+k+ver+++d k v++tYeg+Hnh+ Ro03_G12091 516 LDDGYRWRKYGQKVVKGNPNPRSYYKCTNAGCTVRKHVERASHDLKSVITTYEGKHNHD 574 59********************************************************7 PP

Sequence ? help Back to Top
Protein Sequence Length: 723 aa Download sequence
MTGMDDNVAI IGDWVPPSPS PRDFFSSMLV DGIGSRSFLE SPSTNKAEEF FLGAREGNTN 60 GKNLSQGNGS GDELTEIGSF SEYKSNSRGG LVERIAARAG FNAPRLNTES IRSSDLSLTS 120 DVRSPYLTIP PGLSPTTLLD SPVFLSNSLA QPSPTTGKFP FISNGHGRSS TLLTEAADKA 180 NFFEDMNTSF AFKPLGESGS FFLGPTSKSE NSSQSMEPTK VHTQNQNQNA NNFQLQPDFS 240 RTSTEKDNGA NTGSTDPMAF DTVGGSTEHS PPLDEQPDEE GDQRGGSDSM AAAGGGTPSE 300 DGYNWRKYGQ KQVKGSEYPR SYYKCTHPNC QVKKKVERSH EGHITEIIYK GAHNHPKPPP 360 NRRSGAIGSS NPLIDMRSDV LEQGGPQTGA DGDLVWANAQ KATGGVPDWK HDNLEVTSSA 420 SAGPDYGQQS TSMQAQNGAH LESGDVVDAS STFSNDEDED DRGTHGSVSL AYDGEGDESE 480 SKRRKIEAYA TEMSGATRAI REPRVVVQTT SEVDILDDGY RWRKYGQKVV KGNPNPRSYY 540 KCTNAGCTVR KHVERASHDL KSVITTYEGK HNHDVPAARN SSHVNSGPSG TMSGQVSGSA 600 TQTHPHRPEP SQVHNSMARF ERPMSMGSFS LPGRQQLGPP PGFSFGMNQP GLANLAMAGF 660 GPGQHKVPVL PVHHPYFAQQ RQVSEMGFML PKGEPKVEPG LNMSNASSVY QQLMSRLPLG 720 PHM

Sequence ? help Back to Top

Protein Sequence Length: 723 aa Download sequence

MTGMDDNVAI IGDWVPPSPS PRDFFSSMLV DGIGSRSFLE SPSTNKAEEF FLGAREGNTN  60
GKNLSQGNGS GDELTEIGSF SEYKSNSRGG LVERIAARAG FNAPRLNTES IRSSDLSLTS  120
DVRSPYLTIP PGLSPTTLLD SPVFLSNSLA QPSPTTGKFP FISNGHGRSS TLLTEAADKA  180
NFFEDMNTSF AFKPLGESGS FFLGPTSKSE NSSQSMEPTK VHTQNQNQNA NNFQLQPDFS  240
RTSTEKDNGA NTGSTDPMAF DTVGGSTEHS PPLDEQPDEE GDQRGGSDSM AAAGGGTPSE  300
DGYNWRKYGQ KQVKGSEYPR SYYKCTHPNC QVKKKVERSH EGHITEIIYK GAHNHPKPPP  360
NRRSGAIGSS NPLIDMRSDV LEQGGPQTGA DGDLVWANAQ KATGGVPDWK HDNLEVTSSA  420
SAGPDYGQQS TSMQAQNGAH LESGDVVDAS STFSNDEDED DRGTHGSVSL AYDGEGDESE  480
SKRRKIEAYA TEMSGATRAI REPRVVVQTT SEVDILDDGY RWRKYGQKVV KGNPNPRSYY  540
KCTNAGCTVR KHVERASHDL KSVITTYEGK HNHDVPAARN SSHVNSGPSG TMSGQVSGSA  600
TQTHPHRPEP SQVHNSMARF ERPMSMGSFS LPGRQQLGPP PGFSFGMNQP GLANLAMAGF  660
GPGQHKVPVL PVHHPYFAQQ RQVSEMGFML PKGEPKVEPG LNMSNASSVY QQLMSRLPLG  720
PHM

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G56270.1	0.0	WRKY family protein