PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro03_G10889
Organism
Rubus occidentalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family NAC
Protein Properties Length: 300aa    MW: 34527.7 Da    PI: 8.537
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro03_G10889genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM1609.6e-50231522128
          NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkge 98 
                   pG+rFhPtdeelv +yL++kve+k+++l e ik++diyk++PwdLpk +   +ekewyfF++r kky+++ r+nr+tksg+Wkatg dk+v+s +ge
  Ro03_G10889  23 LPGYRFHPTDEELVRFYLRRKVENKPIRL-ELIKHIDIYKYDPWDLPKaSGLVGEKEWYFFCRRGKKYRNSIRPNRVTKSGFWKATGIDKPVYSVGGE 119
                  59***************************.99***************523344899**************************************9555 PP

          NAM  99 l...vglkktLvfykgrapkgektdWvmheyrl 128
                      +glkk+Lv+y+g+a kg+ktdW+mhe+rl
  Ro03_G10889 120 FhscIGLKKSLVYYRGSAGKGTKTDWMMHEFRL 152
                  4566***************************98 PP
Sequence ? help Back to Top
Protein Sequence    Length: 300 aa     Download sequence    
MEVQKMMMSD SSNNSKQDDA DYLPGYRFHP TDEELVRFYL RRKVENKPIR LELIKHIDIY  60
KYDPWDLPKA SGLVGEKEWY FFCRRGKKYR NSIRPNRVTK SGFWKATGID KPVYSVGGEF  120
HSCIGLKKSL VYYRGSAGKG TKTDWMMHEF RLPATNLGTD ANSNVKDITQ EARNNSSRKH  180
ETNWHKTNTK QSVADSSSKT CSSESDASFG ASAAKKIDQL ERSSTPLFNN DHMYEGNNQL  240
SAGQLTLKDE VVIDPMVNDS YINFWNSNEY EMLRSDKGNW DELSPMIDCV LNPSPLYSFR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G43000.17e-76NAC family protein