PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro03_G10855

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

NAC

Protein Properties

Length: 798aa MW: 92362.7 Da PI: 8.514

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro03_G10855	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	95	1.2e-29	24	148	5	128
NAM 5 frFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvka.eekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvg 101 + F+Ptd++l++++Lkkk++g++l+++ vi+ev+ +++P +L k++ ++ke+yfF++ +ky++++ +r++ +gyWk+ +++++ + ++ ++g Ro03_G10855 24 VGFQPTDQQLITYFLKKKISGNPLPMNMVIDEVQFRNYNPTQLSKMYGFaNQKELYFFTPLFRKYRNSDVVERKAGDGYWKSISREQQIEE-GNVTIG 120 78**********************999**********84333237789*******************************99.999* PP NAM 102 lkktLvfykg.rapkgektdWvmheyrl 128 k+ L fykg ++++++kt+ m ey++ Ro03_G10855 121 YKRLLQFYKGiKQKHSSKTNFYMFEYNM 148 *******98999999*******86 PP

Sequence ? help Back to Top
Protein Sequence Length: 798 aa Download sequence
VMASFQEENR SMMTCELSWL DPKVGFQPTD QQLITYFLKK KISGNPLPMN MVIDEVQFRN 60 YNPTQLSKMY GFANQKELYF FTPLFRKYRN SDVVERKAGD GYWKSISREQ QIEEGNVTIG 120 YKRLLQFYKG IKQKHSSKTN FYMFEYNMGY MHQQKLYEWV LCKVYEEKGE NDNVPNLNSD 180 SNTAEDVAGA QLLLDLKHST SVMAQRKAGN GYWKSTGGEQ IKEGNEIIGL YKWVLCKVYK 240 KKGKNDQNAR NWNNQGTAED DTGEQLLDQK SCNTPSFKVM TVGKDDQWRP MKLPERSEQS 300 VLNRLTFGAS NNGDGAAHLV EIIRDGQDLY LEVQSFDLWT VAEIANEALN VLVLEDFKEH 360 KWSKSKIIVP LTFLKDGTIL KDQIRPRIAW SDVLHLHDAA KENILLYHMK RGMIVATIAK 420 CTVNSSSSHK PSLPSMKDCH SSHNLNLSQN SIIATISEAV PELPFDIITE ILSWLPVESL 480 LRFKCVCKKW SSLIKDDYKF IVKHKDRASS LQLSYQHVWE PNKRSPIRYD EKFIYLSDVA 540 GLFLEESLTS RVFHIRNYAT QQVLYLPDAH EGTKTMGFVF NSSTGECKVA CFYAKEEGDF 600 GREVGFKILS IGKDDQWRTL MLPNQNHKSC HRQYRCATSQ YDGAAHLIEI IRDGQDFKLE 660 VQSFDLWSEC FTITTLPRGV FLDLKKVSVI PWNQTVAVAD RVEEALQVLV LEDFKEHNWN 720 KIIVPLKFLK DDPVLKKKIR PKLAWSDELW FHNAEKNTIF VYDMKRGVIK ETHTKSTEKK 780 YFFHKPSLVT LKGMKNEY

Sequence ? help Back to Top

Protein Sequence Length: 798 aa Download sequence

VMASFQEENR SMMTCELSWL DPKVGFQPTD QQLITYFLKK KISGNPLPMN MVIDEVQFRN  60
YNPTQLSKMY GFANQKELYF FTPLFRKYRN SDVVERKAGD GYWKSISREQ QIEEGNVTIG  120
YKRLLQFYKG IKQKHSSKTN FYMFEYNMGY MHQQKLYEWV LCKVYEEKGE NDNVPNLNSD  180
SNTAEDVAGA QLLLDLKHST SVMAQRKAGN GYWKSTGGEQ IKEGNEIIGL YKWVLCKVYK  240
KKGKNDQNAR NWNNQGTAED DTGEQLLDQK SCNTPSFKVM TVGKDDQWRP MKLPERSEQS  300
VLNRLTFGAS NNGDGAAHLV EIIRDGQDLY LEVQSFDLWT VAEIANEALN VLVLEDFKEH  360
KWSKSKIIVP LTFLKDGTIL KDQIRPRIAW SDVLHLHDAA KENILLYHMK RGMIVATIAK  420
CTVNSSSSHK PSLPSMKDCH SSHNLNLSQN SIIATISEAV PELPFDIITE ILSWLPVESL  480
LRFKCVCKKW SSLIKDDYKF IVKHKDRASS LQLSYQHVWE PNKRSPIRYD EKFIYLSDVA  540
GLFLEESLTS RVFHIRNYAT QQVLYLPDAH EGTKTMGFVF NSSTGECKVA CFYAKEEGDF  600
GREVGFKILS IGKDDQWRTL MLPNQNHKSC HRQYRCATSQ YDGAAHLIEI IRDGQDFKLE  660
VQSFDLWSEC FTITTLPRGV FLDLKKVSVI PWNQTVAVAD RVEEALQVLV LEDFKEHNWN  720
KIIVPLKFLK DDPVLKKKIR PKLAWSDELW FHNAEKNTIF VYDMKRGVIK ETHTKSTEKK  780
YFFHKPSLVT LKGMKNEY

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69490.1	7e-25	NAC family protein