PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Ro03_G10512 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
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Family | bHLH | ||||||||
Protein Properties | Length: 248aa MW: 28268.5 Da PI: 9.5109 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 12.6 | 0.00025 | 53 | 93 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 ++ ++Er+RR+++ +++ +Lr+l+ ka +i+ + YI++Lq Ro03_G10512 53 KNLKAERKRRAKLSDRLLKLRSLMNKA-----------TIVDDSITYIHKLQ 93 56689*****************98655...........77777777777776 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 248 aa Download sequence |
MLCDQYLNDM EFAGSALDEL CLSSDQEGSS RGGRMGRRRY NDEEDDSILY KSKNLKAERK 60 RRAKLSDRLL KLRSLMNKAT IVDDSITYIH KLQKNVNMLQ DQLFEMEALS SLEAPEPEPR 120 KEETDAAEEM KKFGIQAEVS VTQIEGSKLW VKAVLAKKRG GFTKLIEAMT DFGFELTDTS 180 VTTSNGAMLV SSCVIVSIEK KKTTNQGLLF SPFRKKKKKI FLFYVTVHRI PLRYACNRAN 240 QRIDVGHH |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 200 | 219 | KKKTTNQGLLFSPFRKKKKK |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G21330.1 | 2e-27 | bHLH family protein |