PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro03_G08144
Organism
Rubus occidentalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family GATA
Protein Properties Length: 231aa    MW: 25179.7 Da    PI: 8.99
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro03_G08144genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA50.43.1e-16184218234
         GATA   2 s..nCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                  +  nC +++Tp+WRrgp g+ktLCnaCG++yrk +
  Ro03_G08144 184 TnfNCCVKETPMWRRGPLGSKTLCNACGIKYRKLK 218
                  5559****************************976 PP
Sequence ? help Back to Top
Protein Sequence    Length: 231 aa     Download sequence    
ALHINSTSNS ISCFPSPSCS ALSPQTFLAS SAFSLPKLFK SSPFCVHLAK DIKEIQNILL  60
QKMDSLDLTL RLGMSSNEDE QPQLPPIFNA NGASNMTQGA FGSGVSGNVH AGQYSGISIT  120
EFQRSVSLAH TYRREHVLPP PTEMKEYCVI NISNRLAKVG GSRRRKATLS QRPVPEADEN  180
RSCTNFNCCV KETPMWRRGP LGSKTLCNAC GIKYRKLKLK EEQGEGAAEG A
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G20750.15e-14GATA family protein