PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AT3G20750.1 | ||||||||
Common Name | GATA29, MOE17.6 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | GATA | ||||||||
Protein Properties | Length: 208aa MW: 23131.3 Da PI: 8.371 | ||||||||
Description | GATA transcription factor 29 | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 58.6 | 8.4e-19 | 159 | 195 | 1 | 35 |
GATA 1 Cs..nCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 C+ nC++ +Tp+WRrgp g+k+LCnaCG+++rk+++ AT3G20750.1 159 CTnmNCNALNTPMWRRGPLGPKSLCNACGIKFRKEEE 195 55559*****************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00401 | 3.1E-10 | 155 | 204 | IPR000679 | Zinc finger, GATA-type |
Pfam | PF00320 | 2.0E-16 | 159 | 195 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 2.19E-10 | 162 | 195 | No hit | No description |
Gene3D | G3DSA:3.30.50.10 | 1.7E-12 | 162 | 195 | IPR013088 | Zinc finger, NHR/GATA-type |
CDD | cd00202 | 1.65E-10 | 163 | 192 | No hit | No description |
PROSITE profile | PS50114 | 11.358 | 163 | 191 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0030154 | Biological Process | cell differentiation | ||||
GO:0045944 | Biological Process | positive regulation of transcription from RNA polymerase II promoter | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005667 | Cellular Component | transcription factor complex | ||||
GO:0000977 | Molecular Function | RNA polymerase II regulatory region sequence-specific DNA binding | ||||
GO:0001085 | Molecular Function | RNA polymerase II transcription factor binding | ||||
GO:0001228 | Molecular Function | transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding | ||||
GO:0003682 | Molecular Function | chromatin binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 208 aa Download sequence Send to blast |
MEPELDLTLK LGLPNSTVET HLTLSPPTTT TDQGTNVVDG GEVINHRRGL LGDDEVIHNE 60 PTRNNVEFNI RIYNYVFQQF VGAPNTLNFA PYPMPPSPAP APETPPVSDE YVLIDVPARR 120 ARRNNSTVMT NSWKENATPK RIRGCGGFCG GRIEGMKKCT NMNCNALNTP MWRRGPLGPK 180 SLCNACGIKF RKEEERKAKR NVVIVLDD |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | AT3G20750 | |||||
AtGenExpress | AT3G20750 |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
TAIR | Encodes a member of the GATA factor family of zinc finger transcription factors. | |||||
UniProt | Transcriptional regulator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | AT3G20750.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
T-DNA Express | AT3G20750 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB493625 | 0.0 | AB493625.1 Arabidopsis thaliana At3g20750 mRNA for hypothetical protein, partial cds, clone: RAAt3g20750. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_188711.1 | 1e-153 | GATA transcription factor 29 | ||||
Swissprot | Q9LT45 | 1e-154 | GAT29_ARATH; GATA transcription factor 29 | ||||
TrEMBL | A0A178VKN6 | 1e-152 | A0A178VKN6_ARATH; GATA29 | ||||
STRING | AT3G20750.1 | 1e-153 | (Arabidopsis thaliana) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM10652 | 22 | 34 | Representative plant | OGRP68 | 17 | 287 |
Link Out ? help Back to Top | |
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Phytozome | AT3G20750.1 |
Entrez Gene | 821623 |
iHOP | AT3G20750 |
wikigenes | AT3G20750 |
Publications ? help Back to Top | |||
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