PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro03_G07450
Organism
Rubus occidentalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family HD-ZIP
Protein Properties Length: 851aa    MW: 93349.2 Da    PI: 6.5048
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro03_G07450genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox56.44.9e-182986457
                 -SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
     Homeobox  4 RttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                   ++t+eq+e+Le++++++++ps  +r++L + +    +++ +q+kvWFqNrR +ek+
  Ro03_G07450 29 YVRYTSEQVEALERVYAECPKPSSLRRQQLIRDCpilsNIEPKQIKVWFQNRRCREKQ 86
                 5789****************************************************97 PP
2START163.21.9e-511653722204
                  HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..EEEEEEEEX CS
        START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..galqlmvae 97 
                  +aee+++e+++ka+ ++  Wv+++ +++g++++ +f+ s+++sg a+ra+g+v  +++   +e+l+d++ W +++++ e+      g  g+++l++++
  Ro03_G07450 165 IAEETLAEFLSKATGTAVDWVQMPGMKPGPDSVGIFAISQSCSGVAARACGLVSLEPT-KIAEILKDRPSWFRDCRSLEVFTMFPAGngGTIELIYTQ 261
                  7899******************************************************.7777777777***********999999999********* PP

                  XTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHHHHHHHHHH CS
        START  98 lqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwllrslvksglae 191
                  ++a+++l+p Rdf+++Ry+ +l  g++v++++S++     p+    +++vRae+lpSg+li+p+++g+s +++v+h +l++++++++lr+l++s+ + 
  Ro03_G07450 262 TYAPTTLAPaRDFWTLRYTTSLDNGSFVVCERSLSGSGAGPNgasAAQFVRAEMLPSGYLIRPCEGGGSIIHIVDHLNLEAWSVPEVLRPLYESSKVV 359
                  ***********************************999999989999*************************************************** PP

                  HHHHHHHHTXXXX CS
        START 192 gaktwvatlqrqc 204
                  ++k++ a+l++ +
  Ro03_G07450 360 AQKRTIAALRYIR 372
                  ********99865 PP
Sequence ? help Back to Top
Protein Sequence    Length: 851 aa     Download sequence    
MAMAVAHHQH RESSSGSSIN KHLNDAGKYV RYTSEQVEAL ERVYAECPKP SSLRRQQLIR  60
DCPILSNIEP KQIKVWFQNR RCREKQRKES SRLQTVNRKL SAMNKLLMEE NDRLQKQVSQ  120
LVCENGYMRQ QLHTAPANDA SCDSVVTTPQ HSLRDANNPA GLLSIAEETL AEFLSKATGT  180
AVDWVQMPGM KPGPDSVGIF AISQSCSGVA ARACGLVSLE PTKIAEILKD RPSWFRDCRS  240
LEVFTMFPAG NGGTIELIYT QTYAPTTLAP ARDFWTLRYT TSLDNGSFVV CERSLSGSGA  300
GPNGASAAQF VRAEMLPSGY LIRPCEGGGS IIHIVDHLNL EAWSVPEVLR PLYESSKVVA  360
QKRTIAALRY IRQIAQETSG EVVYSLGRQP AVLRTFSQRL IRGFNDAVNG FNDDGWSLIN  420
CDGAEDVILA VNSTKNLTTT NPANSFAFLG GILCAKASML LQNVPPAVLV RFLREHRSEW  480
ADFNVDAYSA ASLKSGSYAY PGLRPTRFTG GQIIMPLGHT IEHEELLEVV RLEGHSLSQE  540
EAFASRDIHL LQICSGVDEN AVGACSELVF APIDEMFPDD APLLPSGFRI IPLESKTSDS  600
KDALATHRTL DLTSSLEVGS TTNHNAGDLS SFHNTRSVLT IAFQFPFESS LQDNVASMAR  660
QYVRSVITSV QRVAMAISPS GLSPSVGPKL SPGSPEALTL ANWICQSYRQ VFHLGAELLQ  720
PDSLGGDSML KHLWHHQDAI LCCSLKSLPV FIFANQAGLD MLETTLVALQ DISLDKIFDE  780
SGRKTLCADF AKLMQQGFAY LPAGICMSTM GRHVSYEQAI GWKVLSGEDN SVHCLAFSFV  840
NWLLIPNFCS T
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60690.10.0HD-ZIP family protein