PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro03_G05188
Organism
Rubus occidentalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family LBD
Protein Properties Length: 344aa    MW: 38448.5 Da    PI: 7.1245
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro03_G05188genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260109.42.7e-3416113197
       DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeee.redamsslvyeAearardPvyGavgvilklqqqleqlkaelall 97 
                  aCaaC+++r++C++dCv+apyf ae++++f++vhklFG+sn++kllk+l++++ r +a++s ++eA ++ +dPv+G +g +++l++++e l++ l++ 
  Ro03_G05188  16 ACAACRHQRKRCEEDCVMAPYFTAEKEEEFKAVHKLFGVSNMSKLLKQLEDQNqRAQAVQSFIWEAYMWKQDPVNGPLGRYKALEEEIEYLRNLLNSN 113
                  7************************************************76655***********************************999877765 PP
Sequence ? help Back to Top
Protein Sequence    Length: 344 aa     Download sequence    
MSIGSNSGEP SGGRHACAAC RHQRKRCEED CVMAPYFTAE KEEEFKAVHK LFGVSNMSKL  60
LKQLEDQNQR AQAVQSFIWE AYMWKQDPVN GPLGRYKALE EEIEYLRNLL NSNRPEQNSS  120
IVLDQGNNSG GGITKDEVEG GVPIYGSVLN YGYTDQNLGL DHGCTSSFTS LLQQGQDAEG  180
SKGLADCVSV ASTYQTPISQ GRGFQDHRRI GMESFNFFHQ YPTIQGGNAI SHNYRPIQVQ  240
GRGRGTFNGH VLQGRARDLV VYDPHIGAMG PQVGPALSGH RRNTSQRFSP YDQHNPIQVP  300
RQAMRQQDQS RQSFPPQHQW NTNSQSCDNF LDVEQVNQVK SEKP
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G06280.13e-27LBD family protein