PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AT1G06280.1 | ||||||||
Common Name | ASL32, F9P14.14, LBD2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | LBD | ||||||||
Protein Properties | Length: 206aa MW: 23416.2 Da PI: 10.02 | ||||||||
Description | LOB domain-containing protein 2 | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 110.3 | 1.4e-34 | 24 | 115 | 1 | 92 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlka 92 aCa+Ck++r+kC+++C+l+pyfpa+++k+f++vhk+FG+snv+k++++++ee+r+++ +sl++eA +r++dPv G++g ++++ ++l+ k+ AT1G06280.1 24 ACASCKHQRKKCNNECILSPYFPARKTKEFQAVHKVFGVSNVQKMVRTVREEDRTKLSDSLTWEALWRQKDPVLGSYGEYRRICEELKLYKS 115 7***********************************************************************************99998775 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 24.17 | 23 | 123 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 8.5E-32 | 24 | 114 | IPR004883 | Lateral organ boundaries, LOB |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008150 | Biological Process | biological_process |
Sequence ? help Back to Top |
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Protein Sequence Length: 206 aa Download sequence Send to blast |
MMQRNSNNTS ITSNISNNSS SHQACASCKH QRKKCNNECI LSPYFPARKT KEFQAVHKVF 60 GVSNVQKMVR TVREEDRTKL SDSLTWEALW RQKDPVLGSY GEYRRICEEL KLYKSLVHNQ 120 PLIGWDNNQR VFNNNSNNKN GLAMTNSSGS GGFSVNNNGV GVNREIVNGG YASRNVQGGW 180 ENLKHDQRQQ CYAVINNGFK QHYLPL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 8e-18 | 25 | 101 | 12 | 88 | LOB family transfactor Ramosa2.1 |
5ly0_B | 8e-18 | 25 | 101 | 12 | 88 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | AT1G06280 | |||||
AtGenExpress | AT1G06280 |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00128 | DAP | 27203113 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | AT1G06280.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
T-DNA Express | AT1G06280 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB473865 | 0.0 | AB473865.1 Arabidopsis thaliana ASL32 mRNA for ASYMMETRIC LEAVES2-like 32 protein, complete cds. | |||
GenBank | CP002684 | 0.0 | CP002684.1 Arabidopsis thaliana chromosome 1 sequence. | |||
GenBank | F9P14 | 0.0 | AC025290.3 Sequence of BAC F9P14 from Arabidopsis thaliana chromosome 1, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_172118.1 | 1e-153 | LOB domain-containing protein 2 | ||||
Swissprot | Q9LNB9 | 1e-154 | LBD2_ARATH; LOB domain-containing protein 2 | ||||
TrEMBL | A0A178WMU7 | 1e-152 | A0A178WMU7_ARATH; LBD2 | ||||
STRING | AT1G06280.1 | 1e-152 | (Arabidopsis thaliana) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM10539 | 26 | 35 | Representative plant | OGRP60 | 16 | 318 |
Link Out ? help Back to Top | |
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Phytozome | AT1G06280.1 |
Entrez Gene | 837139 |
iHOP | AT1G06280 |
wikigenes | AT1G06280 |