PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro03_G05182

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

VOZ

Protein Properties

Length: 484aa MW: 53744.4 Da PI: 6.297

Description

VOZ family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro03_G05182	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	VOZ	440.8	1.8e-135	208	424	1	217
VOZ 1 pppsaflgpkcalwdctrpaqgsewlqdycssfhatlalneglpgttpvlrpkgidlkdgllfaalsakvqgkevgipecegaatakspwnaaelfdl 98 pppsaflgpkcalwdc+rpaqg +w++dycssfha+lalneg+pg+ pvlrp+gi+lkdgllfaal ak+qgk+vgipecegaatakspwna+elfdl Ro03_G05182 208 PPPSAFLGPKCALWDCPRPAQGLDWCHDYCSSFHAALALNEGPPGMGPVLRPGGIGLKDGLLFAALGAKAQGKDVGIPECEGAATAKSPWNAPELFDL 305 89********************************************************************************************** PP VOZ 99 sllegetirewlffdkprrafesgnrkqrslpdysgrgwhesrkqvmkefgglkrsyymdpqpsssfewhlyeyeineldalalyrlelklvdekksa 196 +lege +rewlffdkprrafesgnrkqrslpdy+grgwhesrkqvm+efgglkrsyymdpqp+++fewhlyeyein++da+alyrlelklvd+kk++ Ro03_G05182 306 LVLEGEMLREWLFFDKPRRAFESGNRKQRSLPDYNGRGWHESRKQVMNEFGGLKRSYYMDPQPLNHFEWHLYEYEINKCDACALYRLELKLVDGKKNS 403 ********************************************************************************************** PP VOZ 197 kgkvskdsladlqkklgrlta 217 kgk+s+ds+adlqk++grl+a Ro03_G05182 404 KGKLSNDSVADLQKQMGRLSA 424 *****************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 484 aa Download sequence
MRKGSKSNCK SVSHKLFKDK AKNRVDDLQG MFMDLQFARK ESRTIDAALL EEQVHQMLRE 60 WKSELNEPSP ASSLQQGGSL GSFSSDICRL LQLCEEEDDA TSPLAAPKPE PNDQKLKVGE 120 SLVFQEGFSA SQGQQEQGFP LVDQCKSSLL GVRSATVNDL EGANQLDYHQ FDLRQDFEHS 180 YYSCFNGTAL SGEDALSHVT SYLPSICPPP SAFLGPKCAL WDCPRPAQGL DWCHDYCSSF 240 HAALALNEGP PGMGPVLRPG GIGLKDGLLF AALGAKAQGK DVGIPECEGA ATAKSPWNAP 300 ELFDLLVLEG EMLREWLFFD KPRRAFESGN RKQRSLPDYN GRGWHESRKQ VMNEFGGLKR 360 SYYMDPQPLN HFEWHLYEYE INKCDACALY RLELKLVDGK KNSKGKLSND SVADLQKQMG 420 RLSAEFPSDN KRHVKGRAKV NAKVGVGSVY YTSNRGAATN GTFEYGTGPP YDYLVDNLSG 480 YYLT

Sequence ? help Back to Top

Protein Sequence Length: 484 aa Download sequence

MRKGSKSNCK SVSHKLFKDK AKNRVDDLQG MFMDLQFARK ESRTIDAALL EEQVHQMLRE  60
WKSELNEPSP ASSLQQGGSL GSFSSDICRL LQLCEEEDDA TSPLAAPKPE PNDQKLKVGE  120
SLVFQEGFSA SQGQQEQGFP LVDQCKSSLL GVRSATVNDL EGANQLDYHQ FDLRQDFEHS  180
YYSCFNGTAL SGEDALSHVT SYLPSICPPP SAFLGPKCAL WDCPRPAQGL DWCHDYCSSF  240
HAALALNEGP PGMGPVLRPG GIGLKDGLLF AALGAKAQGK DVGIPECEGA ATAKSPWNAP  300
ELFDLLVLEG EMLREWLFFD KPRRAFESGN RKQRSLPDYN GRGWHESRKQ VMNEFGGLKR  360
SYYMDPQPLN HFEWHLYEYE INKCDACALY RLELKLVDGK KNSKGKLSND SVADLQKQMG  420
RLSAEFPSDN KRHVKGRAKV NAKVGVGSVY YTSNRGAATN GTFEYGTGPP YDYLVDNLSG  480
YYLT

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G28520.2	0.0	VOZ family protein