PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro02_G35699
Organism
Rubus occidentalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family BBR-BPC
Protein Properties Length: 296aa    MW: 33318.9 Da    PI: 10.1058
Description BBR-BPC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro02_G35699genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GAGA_bind361.81.4e-1102129618301
    GAGA_bind  18 aslkenlglqlmssiaerdakirernlalsekkaavaerdmaflqrdkalaernkalverdnkllalllvenslasalpvgvqvlsgtksidslqqls 115
                  ++l   +++++ms+iaerda+irern+a++ek++a+a+rd+a+ qrd+a+a+r+ a++erdn+++al  ++ns++++l  g +v +g+k ++   + +
  Ro02_G35699  21 NALV--MNKKIMSIIAERDAAIRERNAAITEKNEALASRDEALRQRDEAFAQRDTAIMERDNAFAALHIRDNSMNFQL--GGGVQRGAKRMHYPSN-H 113
                  4566..99*****************************************************************99888..6667799999997666.7 PP

    GAGA_bind 116 epqledsavelreeeklealpieeaaeeakekkkkkkrqrakkpkekkakkkkkksekskkkvkkesaderskaekksidlvlngvslDestlPvPvC 213
                    +++d ++ +++  ++ea+pi+    ea +++++k+++++k  k++k ++kk  +e+ +++ ++++   + ++e++++dl+ln vs+De+t+PvPvC
  Ro02_G35699 114 PANMADASYSTKDVPITEAFPISVLSAEAVKSRQTKRTKENKASKASKPSRKKV-GEDLNRQASTDGI--KYRSEWDTQDLGLNLVSFDETTMPVPVC 208
                  79********************************99999999999988888776.7777777777775..69************************** PP

    GAGA_bind 214 sCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrgaRiagrKmSqgafkklLekLaaeGydlsnpvDLkdhWAkHGtnkfvtir 301
                  sCtG++rqCYkWGnGGWqS+CCtt++S+yPLP+++++r+aR++grKmS+++f++lL++LaaeG+dls p+DLk++WA+HGtn+++ti+
  Ro02_G35699 209 SCTGMPRQCYKWGNGGWQSSCCTTNMSMYPLPQMPNKRHARMGGRKMSGSVFTRLLSRLAAEGHDLSLPLDLKEYWARHGTNRYITIK 296
                  ***************************************************************************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 296 aa     Download sequence    
MVWGTKEIWN MTAQQQVKEP NALVMNKKIM SIIAERDAAI RERNAAITEK NEALASRDEA  60
LRQRDEAFAQ RDTAIMERDN AFAALHIRDN SMNFQLGGGV QRGAKRMHYP SNHPANMADA  120
SYSTKDVPIT EAFPISVLSA EAVKSRQTKR TKENKASKAS KPSRKKVGED LNRQASTDGI  180
KYRSEWDTQD LGLNLVSFDE TTMPVPVCSC TGMPRQCYKW GNGGWQSSCC TTNMSMYPLP  240
QMPNKRHARM GGRKMSGSVF TRLLSRLAAE GHDLSLPLDL KEYWARHGTN RYITIK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G21240.11e-127BBR-BPC family protein