PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro02_G34940

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

TALE

Protein Properties

Length: 447aa MW: 50478.3 Da PI: 6.548

Description

TALE family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro02_G34940	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	26.6	1e-08	365	403	18	54
HHHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 18 lFek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 +F++ ++yp+ +e+ LA k gLt +qV++WF N R + Ro02_G34940 365 MFQNflHPYPKDAEKHLLAVKSGLTRSQVSNWFINARVR 403 6887779******************************88 PP
2	BELL	73.4	3.8e-24	239	305	2	69
BELL 2 rqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaia 69 rqe++ kkakL+ ll+++d+ Y+q+v++++tv+s+F+a+++ ++ +++++Alk+iS +++L+++i+ Ro02_G34940 239 RQEIKTKKAKLVALLQMLDDCYNQCVDEIHTVVSAFHAATDTDP-SIHARFALKTISMFYKNLRERIS 305 89****************************************.9******************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 447 aa Download sequence
MDNQMFNVPT DVTGRNSVAS DGIGPHTMMN SFVQSYSLDH NHQNHFMAVL PMLPTFDGES 60 VIDCQSDHLH DTNSAGVAES YAFVASQRRN NLREPPFGSS SFSDHSVFQG IPNSAASFST 120 LFAASGNLQE DLNNLAISAT PIHSSEIYVS NACANISNSL IATPENYGYD EILGSINSQQ 180 WEINKYAAAP SEPEPGERTS VRTMGLQPYS SSIGNLDPNG WSSSNDSRLE VQNEPALHRQ 240 EIKTKKAKLV ALLQMLDDCY NQCVDEIHTV VSAFHAATDT DPSIHARFAL KTISMFYKNL 300 RERISTYCLA MTANFNPESP SESETSFDEM QKQLALQHMK KKEHQIWRPQ RGLPEKSVSV 360 LRAWMFQNFL HPYPKDAEKH LLAVKSGLTR SQVSNWFINA RVRLWKPMIE EMYSDMNRRK 420 AREDENTERN HRSLHHISLN NHKFHVN

Sequence ? help Back to Top

Protein Sequence Length: 447 aa Download sequence

MDNQMFNVPT DVTGRNSVAS DGIGPHTMMN SFVQSYSLDH NHQNHFMAVL PMLPTFDGES  60
VIDCQSDHLH DTNSAGVAES YAFVASQRRN NLREPPFGSS SFSDHSVFQG IPNSAASFST  120
LFAASGNLQE DLNNLAISAT PIHSSEIYVS NACANISNSL IATPENYGYD EILGSINSQQ  180
WEINKYAAAP SEPEPGERTS VRTMGLQPYS SSIGNLDPNG WSSSNDSRLE VQNEPALHRQ  240
EIKTKKAKLV ALLQMLDDCY NQCVDEIHTV VSAFHAATDT DPSIHARFAL KTISMFYKNL  300
RERISTYCLA MTANFNPESP SESETSFDEM QKQLALQHMK KKEHQIWRPQ RGLPEKSVSV  360
LRAWMFQNFL HPYPKDAEKH LLAVKSGLTR SQVSNWFINA RVRLWKPMIE EMYSDMNRRK  420
AREDENTERN HRSLHHISLN NHKFHVN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G32980.1	4e-85	TALE family protein