PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro02_G26717
Organism
Rubus occidentalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family ERF
Protein Properties Length: 274aa    MW: 31168.3 Da    PI: 9.5374
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro02_G26717genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP235.13.4e-11151194151
          AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaark 51 
                  +  +GV++  k+ +W A I++      +k+++lg+ g+ eeAa ++++a+ 
  Ro02_G26717 151 CVMRGVYF--KNMKWQAAIKVD-----KKQIHLGTVGSQEEAAHLYDRAAF 194
                  568***99..47*********4.....5********************985 PP
Sequence ? help Back to Top
Protein Sequence    Length: 274 aa     Download sequence    
MHETQHYTQF SFFTTTFPSL KSQSLFAFGI SPSLSDSAIQ PTPPSLPPQL YPSTMVSLRR  60
RRLLGLCSGR SSVLTPLPLF CDNAKPDSVH PMPSKDRNLL DGSTGAKIEP LSSTAYGSSL  120
AKEQPEKYVP GPPIKRRKRH RRKHIHNQEP CVMRGVYFKN MKWQAAIKVD KKQIHLGTVG  180
SQEEAAHLYD RAAFMCGREP NFELPEQEKQ ELRKFKWDEF LAVTRHSINN KKVKKWQWAA  240
SEKRSETSPL QNADWDDEQQ VNGLSASEDG EEDT
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G13040.26e-44ERF family protein