PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AT4G13040.2
Organism
Arabidopsis thaliana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family ERF
Protein Properties Length: 170aa    MW: 20413.4 Da    PI: 10.0438
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AT4G13040.2genomeTAIRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP239.51.4e-1261102351
          AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaark 51 
                   +GV++ k + +W A I++      +k+++lg+f + eeAa+++++a+ 
  AT4G13040.2  61 MRGVYY-K-NMKWQAAIKVE-----KKQIHLGTFSSQEEAARLYDRAAF 102
                  79**96.5.7*********6.....6********************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS510329.37449115IPR001471AP2/ERF domain
SMARTSM003803.3E-560117IPR001471AP2/ERF domain
PfamPF008477.6E-760103IPR001471AP2/ERF domain
SuperFamilySSF541713.33E-1061105IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.104.6E-962107IPR001471AP2/ERF domain
CDDcd000182.15E-1262113No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009873Biological Processethylene-activated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000293anatomyguard cell
Sequence ? help Back to Top
Protein Sequence    Length: 170 aa     Download sequence    Send to blast
MPEQLIIPGQ QKRLQRLSWR KRLLKKEAEE LGQNICISDQ PPKRRKQHRR KRVHNQEPCL  60
MRGVYYKNMK WQAAIKVEKK QIHLGTFSSQ EEAARLYDRA AFMCGREPNF ELSEEVIREL  120
KQQSWEEFLN CTRRTITNKK PKSRIEHEDT KINASMPHQP EEEEQDSDKM
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
14251KRRKQHRRKR
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
At.334240.0seed
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO1453401570.0
Expression AtlasAT4G13040-
AtGenExpressAT4G13040-
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Function -- GeneRIF ? help Back to Top
  1. At4g13040 (referred herein as Apetala 2 family protein involved in SA mediated disease defense 1 - APD1) is a positive regulator of disease defense that functions upstream of salicylic acid (SA) accumulation.
    [PMID: 24612849]
  2. At4g13040 At4g13040 At4g13040
    [PMID: 26063506]
Cis-element ? help Back to Top
SourceLink
PlantRegMapAT4G13040.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Interaction ? help Back to Top
Source Intact With
BioGRIDAT5G11260
Phenotype -- Mutation ? help Back to Top
Source ID
T-DNA ExpressAT4G13040
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY1336900.0AY133690.1 Arabidopsis thaliana clone C103146 unknown protein (At4g13040) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001078381.11e-124Integrase-type DNA-binding superfamily protein
RefseqNP_001329253.11e-124Integrase-type DNA-binding superfamily protein
SwissprotQ56XP94e-94ERFL1_ARATH; Ethylene-responsive transcription factor-like protein At4g13040
TrEMBLA0A1P8B7481e-97A0A1P8B748_ARATH; Integrase-type DNA-binding superfamily protein
STRINGAT4G13040.33e-92(Arabidopsis thaliana)
Publications ? help Back to Top
  1. Nakano T,Suzuki K,Fujimura T,Shinshi H
    Genome-wide analysis of the ERF gene family in Arabidopsis and rice.
    Plant Physiol., 2006. 140(2): p. 411-32
    [PMID:16407444]
  2. Zhuang J, et al.
    Genome-wide analysis of the AP2/ERF gene family in Populus trichocarpa.
    Biochem. Biophys. Res. Commun., 2008. 371(3): p. 468-74
    [PMID:18442469]
  3. Welling A,Palva ET
    Involvement of CBF transcription factors in winter hardiness in birch.
    Plant Physiol., 2008. 147(3): p. 1199-211
    [PMID:18467468]
  4. Gong W, et al.
    The development of protein microarrays and their applications in DNA-protein and protein-protein interaction analyses of Arabidopsis transcription factors.
    Mol Plant, 2008. 1(1): p. 27-41
    [PMID:19802365]
  5. Giri MK, et al.
    The Arabidopsis thaliana At4g13040 gene, a unique member of the AP2/EREBP family, is a positive regulator for salicylic acid accumulation and basal defense against bacterial pathogens.
    J. Plant Physiol., 2014. 171(10): p. 860-7
    [PMID:24612849]
  6. Chen WH,Li PF,Chen MK,Lee YI,Yang CH
    FOREVER YOUNG FLOWER Negatively Regulates Ethylene Response DNA-Binding Factors by Activating an Ethylene-Responsive Factor to Control Arabidopsis Floral Organ Senescence and Abscission.
    Plant Physiol., 2015. 168(4): p. 1666-83
    [PMID:26063506]