PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro02_G23733

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

C2H2

Protein Properties

Length: 271aa MW: 30375.4 Da PI: 6.5717

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro02_G23733	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	12.9	0.00034	33	55	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ Cgk+F + L H r H Ro02_G23733 33 HVCKVCGKRFETGNGLGGHTRIH 55 79**********99999999988 PP
2	zf-C2H2	11.3	0.0011	191	213	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C +C+k F++ L H ++H Ro02_G23733 191 HVCDICSKEFRTGQALGGHKSSH 213 79**********99999999888 PP

Sequence ? help Back to Top
Protein Sequence Length: 271 aa Download sequence
MKSFEEMESH FHEDDQWRRH HEVEHLQKSS KDHVCKVCGK RFETGNGLGG HTRIHNLLLP 60 NKKINKQLYH PSSQDYWKDV RRLRALSVSP SQSSSSATSS SSCESSPSDL TESDCDVEKS 120 LPSWGKKDVR GRSSTSTSST SASSLSAYQT VPNKPGEAAK IKADETSWSD KIVKPKMKMM 180 MRSNSEKSRK HVCDICSKEF RTGQALGGHK SSHYYYAGGT SVRVDQVVCD EDEGEEEEEE 240 EEEASTSVTN PKTLEFDLNQ LPLSEGTVEH K

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G27730.1	6e-07	C2H2 family protein