PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro02_G20091

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

ERF

Protein Properties

Length: 659aa MW: 70805.8 Da PI: 8.9464

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro02_G20091	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	63.9	3.4e-20	220	269	2	55
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr+++ +g+W+AeIrdp + +r++lg+f+tae Aa+a+++a+++++g Ro02_G20091 220 RYRGVRQRP-WGKWAAEIRDP-----HkaARVWLGTFDTAEAAARAYDEAALRFRG 269 7******.******7.....337***********************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 659 aa Download sequence
MCFLKVANQR SSGDGQFQAQ NDDAVVAYEE AAAAELMNNQ SLPGVGLQRP PQNVSPSMFL 60 GYSPPAEMSA MVSALTHVVS GQRHVVSGLS GGVASSFGQV YSAASDSPPL SSFSSNITSS 120 SGSSWVGQKR GREEQTTSAA AQAQLMDQTN RAYRGGYVDF RATQPESSTG ATTTVTEDDT 180 QTVTSAGSAV TATGTTGVPL TPSSSAGIVS PVETGETRRR YRGVRQRPWG KWAAEIRDPH 240 KAARVWLGTF DTAEAAARAY DEAALRFRGN RAKLNFPENV RFIPPQPPPL QNYAQPINSN 300 STQSHLAPNP SVQPFQPPPP PPQQPLYQSQ AFQGSTQSLI DYLDYSHLLQ SSIDIHSQQQ 360 QPTNLLEQMY YNSQLASLQS SLLQQPPPSS STPSSTLPSS ASSSASFPLY FSDQQQLAFF 420 GAPQNPNPGG PSGFPAPSWS HSGHNPSSSG EKGYREENIQ FCAGGGVLDD YPLMLILYAF 480 DGGYAPVLCF LGSPRWLASR LDLVFCLSLP VLLGVNQIQG FKVWDPGSAT LVFPVGDLIT 540 GGALLKFNLR ASPTHGVKTY FGSKSISNPT YFGPKSRKKA ILRVKLGLIP SPDLYWLGGP 600 QSPHADDISD RDAGKRETRR GRVTDTHGRE KGSRAPRYHA RVAHQNACRQ LGPILQSAQ

Sequence ? help Back to Top

Protein Sequence Length: 659 aa Download sequence

MCFLKVANQR SSGDGQFQAQ NDDAVVAYEE AAAAELMNNQ SLPGVGLQRP PQNVSPSMFL  60
GYSPPAEMSA MVSALTHVVS GQRHVVSGLS GGVASSFGQV YSAASDSPPL SSFSSNITSS  120
SGSSWVGQKR GREEQTTSAA AQAQLMDQTN RAYRGGYVDF RATQPESSTG ATTTVTEDDT  180
QTVTSAGSAV TATGTTGVPL TPSSSAGIVS PVETGETRRR YRGVRQRPWG KWAAEIRDPH  240
KAARVWLGTF DTAEAAARAY DEAALRFRGN RAKLNFPENV RFIPPQPPPL QNYAQPINSN  300
STQSHLAPNP SVQPFQPPPP PPQQPLYQSQ AFQGSTQSLI DYLDYSHLLQ SSIDIHSQQQ  360
QPTNLLEQMY YNSQLASLQS SLLQQPPPSS STPSSTLPSS ASSSASFPLY FSDQQQLAFF  420
GAPQNPNPGG PSGFPAPSWS HSGHNPSSSG EKGYREENIQ FCAGGGVLDD YPLMLILYAF  480
DGGYAPVLCF LGSPRWLASR LDLVFCLSLP VLLGVNQIQG FKVWDPGSAT LVFPVGDLIT  540
GGALLKFNLR ASPTHGVKTY FGSKSISNPT YFGPKSRKKA ILRVKLGLIP SPDLYWLGGP  600
QSPHADDISD RDAGKRETRR GRVTDTHGRE KGSRAPRYHA RVAHQNACRQ LGPILQSAQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G50080.1	8e-23	ERF family protein