PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro02_G19684
Organism
Rubus occidentalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family Trihelix
Protein Properties Length: 275aa    MW: 31723.7 Da    PI: 5.3597
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro02_G19684genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix60.93.1e-1931118286
     trihelix   2 WtkqevlaLiearremeerlrrgklkkplWeevskkm......rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                  Wt++e+ +Li+a++e++ +lrrg+lk+ +Weev+  +      + +  +++++qC++k+e+l++r++ +k++ +       s +pyfd +e
  Ro02_G19684  31 WTHEETVHLIQAYQEKWYELRRGQLKASQWEEVAVTVaarcgyEYTEPSKTSTQCRHKMEKLRQRHRSVKKRLGLS---FGSGWPYFDLME 118
                  ***********************************9986666666666899***********************94...5557*****998 PP
Sequence ? help Back to Top
Protein Sequence    Length: 275 aa     Download sequence    
MATPPSPTAS PSASASPVST TATKKPQPIP WTHEETVHLI QAYQEKWYEL RRGQLKASQW  60
EEVAVTVAAR CGYEYTEPSK TSTQCRHKME KLRQRHRSVK KRLGLSFGSG WPYFDLMERL  120
EQGPLPISAR RPYQEQEEEE EDEAADEVDE EDEENYRKLQ SLDYILRRPT IVNRFSGAKQ  180
GYFRESAAKR PREAVDDDGD YGDVVDGQKG TEMVVELATE IKAFAKRLIG VENMRMEIMK  240
ETQRCRLEME NKRIDMIVQS QRKIVDSIDR AFGLD
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24860.14e-47Trihelix family protein