PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AT3G24860.1
Organism
Arabidopsis thaliana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family Trihelix
Protein Properties Length: 310aa    MW: 35191.4 Da    PI: 9.7586
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AT3G24860.1genomeTAIRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix70.92.3e-2265145286
     trihelix   2 WtkqevlaLiearremeerlrrgklkkplWeevskkm.rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                  Wt++e+l+Lie ++e++ +++rg lk ++Wee++ +  ++ g+er+++qC++k+e+++kr++ ++++++       s +p+++q+e
  AT3G24860.1  65 WTQDETLLLIESYKEKWFAIGRGPLKSTHWEEIAVAAsSRSGVERTSTQCRHKIEKMRKRFRSERQSMGPI-----SIWPFYNQME 145
                  **********************************9887999****************************84.....68*******8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500906.52865122IPR017877Myb-like domain
PfamPF138373.0E-1965147No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000293anatomyguard cell
Sequence ? help Back to Top
Protein Sequence    Length: 310 aa     Download sequence    Send to blast
MATPSPTSSP PSDSNPNSAA TPPHQKQPPS PPQPTNPSSP PPHTTVVALA ASTSAVARKT  60
QPVLWTQDET LLLIESYKEK WFAIGRGPLK STHWEEIAVA ASSRSGVERT STQCRHKIEK  120
MRKRFRSERQ SMGPISIWPF YNQMEELDSS NPAPISARPL TRLPPNSNNR YVDDEEEDEE  180
EDNNNYEEEE EEDERQSKSR SINYILRRPG TVNRFAGVGG GLLSWGQKER SSKRKRNDGD  240
GGERRRKGMR AVAAEIRAFA ERVMVMEKKK IEFAKETVRL RKEMEIRRIN LIQSSQTQLL  300
QFINNAFDSF
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1232246KRKRNDGDGGERRRK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
At.374540.0flower
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasAT3G24860
AtGenExpressAT3G24860
Function -- GeneRIF ? help Back to Top
  1. AST1 regulates stress-related genes by binding to the AGAG-box and/or GT motifs to mediate salt and osmotic stress tolerance. [AST1]
    [PMID: 29420810]
Cis-element ? help Back to Top
SourceLink
PlantRegMapAT3G24860.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Interaction ? help Back to Top
Source Intact With
BioGRIDAT3G58630, AT1G54060
Phenotype -- Mutation ? help Back to Top
Source ID
T-DNA ExpressAT3G24860
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0286090.0AB028609.2 Arabidopsis thaliana genomic DNA, chromosome 3, TAC clone:K7P8.
GenBankAK1181570.0AK118157.1 Arabidopsis thaliana At3g24860 mRNA for unknown protein, complete cds, clone: RAFL19-47-G19.
GenBankBT0054910.0BT005491.1 Arabidopsis thaliana clone U50805 unknown protein (At3g24860) mRNA, complete cds.
GenBankCP0026860.0CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_189130.10.0Homeodomain-like superfamily protein
TrEMBLQ9LRX50.0Q9LRX5_ARATH; Homeodomain-like superfamily protein
STRINGAT3G24860.10.0(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM102812232
Representative plantOGRP40591122
Publications ? help Back to Top
  1. Riechmann JL, et al.
    Arabidopsis transcription factors: genome-wide comparative analysis among eukaryotes.
    Science, 2000. 290(5499): p. 2105-10
    [PMID:11118137]
  2. Dal Bosco C, et al.
    Inactivation of the chloroplast ATP synthase gamma subunit results in high non-photochemical fluorescence quenching and altered nuclear gene expression in Arabidopsis thaliana.
    J. Biol. Chem., 2004. 279(2): p. 1060-9
    [PMID:14576160]
  3. Arabidopsis Interactome Mapping Consortium
    Evidence for network evolution in an Arabidopsis interactome map.
    Science, 2011. 333(6042): p. 601-7
    [PMID:21798944]
  4. Efroni I, et al.
    Regulation of leaf maturation by chromatin-mediated modulation of cytokinin responses.
    Dev. Cell, 2013. 24(4): p. 438-45
    [PMID:23449474]
  5. Xu H, et al.
    Arabidopsis thaliana Trihelix Transcription Factor AST1 Mediates Salt and Osmotic Stress Tolerance by Binding to a Novel AGAG-Box and Some GT Motifs.
    Plant Cell Physiol., 2018. 59(5): p. 946-965
    [PMID:29420810]