PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro02_G18391
Organism
Rubus occidentalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family NAC
Protein Properties Length: 310aa    MW: 35558.7 Da    PI: 5.8313
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro02_G18391genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM153.11.3e-47181443128
          NAM   3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk..kge 98 
                  pGfrFhPt+eel+ +yLk  v gk+l++ ++i+ ++iy+++PwdLp   k +e+ewyfF++rd+k+ +g r+nr+t++g+Wkatg+d++++s    ++
  Ro02_G18391  18 PGFRFHPTEEELLEFYLKSVVLGKRLRF-DIIEFLNIYRHDPWDLPGLSKIGEREWYFFVSRDRKHGSGGRPNRTTETGFWKATGSDRKIVSLsdPKR 114
                  9*************************99.99***************8778899*************************************99766677 PP

          NAM  99 lvglkktLvfykgrapkgektdWvmheyrl 128
                   +gl+ktLvfykgrap+g+ktdWvm+eyrl
  Ro02_G18391 115 IIGLRKTLVFYKGRAPRGSKTDWVMNEYRL 144
                  8***************************98 PP
Sequence ? help Back to Top
Protein Sequence    Length: 310 aa     Download sequence    
MASATTVNSE MKPELELPGF RFHPTEEELL EFYLKSVVLG KRLRFDIIEF LNIYRHDPWD  60
LPGLSKIGER EWYFFVSRDR KHGSGGRPNR TTETGFWKAT GSDRKIVSLS DPKRIIGLRK  120
TLVFYKGRAP RGSKTDWVMN EYRLPDNCKL LKDIVLCKIY RKATSLKVLE QRAAMEEEMK  180
SFPANSPNIS SSSPTSLDTI ISSGSIQQQE AEPHNDLTAQ IPKMPFNQVV LKEELAEDAA  240
LAVALEDQQE EDEQAMEIKE SRTALQIPFG KDKLPELLVP KMSMDWTQDQ FWAPMNSPWL  300
LTPYANILNF
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G17040.11e-105NAC family protein