PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro02_G17701
Organism
Rubus occidentalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family Trihelix
Protein Properties Length: 562aa    MW: 63920.5 Da    PI: 6.9364
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro02_G17701genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix90.41.9e-2860144187
     trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
                  rW++qe+laL+++r+em+ ++r+++lk+plW+evs+k+ e g+ rs+k+Ckek+en+ k+++++keg++++  ++ +t+++f++lea
  Ro02_G17701  60 RWPRQETLALLKIRSEMDAAFRDSSLKAPLWQEVSRKLGELGYYRSAKKCKEKFENVYKYHRRTKEGRSGK--PEGKTYRFFEELEA 144
                  8********************************************************************95..55568******985 PP
2trihelix100.21.7e-31400485187
     trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
                  rW+k ev+aLi++r+ ++ +++++  k+ lWee+s+ m++ g++rs+k+Ckekwen+nk++kk+ke++k r +e+s+tcpyf+qlea
  Ro02_G17701 400 RWPKTEVQALINLRTCLDVKYQEAGPKGSLWEEISAGMKRLGYNRSSKRCKEKWENINKYFKKVKESSKTR-PEDSKTCPYFHQLEA 485
                  8********************************************************************97.99***********85 PP
Sequence ? help Back to Top
Protein Sequence    Length: 562 aa     Download sequence    
MLGSSGEAMM VAEAAVLLHE GSSTETAAAL LSNSGEEDHH KETSRDVDDD HRNYGGGGNR  60
WPRQETLALL KIRSEMDAAF RDSSLKAPLW QEVSRKLGEL GYYRSAKKCK EKFENVYKYH  120
RRTKEGRSGK PEGKTYRFFE ELEAFDHHQN IHHPSIIPPK PPVVLWTNNS HHPNQTVPPV  180
VTVPQNGVTS ATDPIIHSST NNISLLPPQE NTNGFRLLNP ITTNLFSSST SSTTASDEEF  240
QQRNKRKRKW KYFFTRLTKQ VLEKQEKLQE KFLEAIAKCD QERMVKEEAW RMQEMARIDR  300
QHEILVQERS TAAAKDAALI QFLQEVSLQH NSNDTRALLV VPPPTLPRPL PALPVSWATD  360
QRGGLITNSD SAPKSIEARK VYSNGESNPP VLVASTGSSR WPKTEVQALI NLRTCLDVKY  420
QEAGPKGSLW EEISAGMKRL GYNRSSKRCK EKWENINKYF KKVKESSKTR PEDSKTCPYF  480
HQLEALYKEK NNKIEYHKSC IDDHSVEKLQ TVQPLRENVD PNQEEDELDH GEDGESTEED  540
QDHGQIGIVT NYTPSSMEMV ES
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76890.21e-121Trihelix family protein