PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro02_G17699

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

Trihelix

Protein Properties

Length: 448aa MW: 51462.3 Da PI: 6.7225

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro02_G17699	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	85.2	8.3e-27	121	217	1	85
trihelix 1 rWtkqevlaLiearremeerlrrgk...........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.tsessstcpyfdql 85 +Wt+++v++Li+a+++++e+ ++++ +kk++W++vsk+m+ergf++sp+qC++k+++lnkrykk++++ +++ +++++++ +++d + Ro02_G17699 121 KWTDKMVRLLITAVSYIGEDTGSDCggggrrkfsalQKKGKWKSVSKVMAERGFHVSPQQCEDKFNDLNKRYKKLNDMLGRGtSCQVVENPALLDVI 217 7*******************99888999999999********************************************569999888887765 PP

Sequence ? help Back to Top
Protein Sequence Length: 448 aa Download sequence
MEGHLSQGGR IPGGASFVGL DLQGSMRAHH QTQHPHNLHQ QHHPNPRQGS MVHPSIHEGF 60 PVKMGTMHNC DQTLSMVDYN KGEKCKNSTS DEDEPSYTEE GIDSHIEANR GKKGSPWQRV 120 KWTDKMVRLL ITAVSYIGED TGSDCGGGGR RKFSALQKKG KWKSVSKVMA ERGFHVSPQQ 180 CEDKFNDLNK RYKKLNDMLG RGTSCQVVEN PALLDVIDYL TEKEKDDVRK ILSSKHLFYE 240 EMCSYHNGNR LHLPHDPALQ HSLQEALRNR DDHDNDDLRR HHRDDLDEDD QDMETDEHDG 300 FEENNASHGD KRGIFGGLGD SVKRLRQGQG GEDFNFSGSL NAQDCSKSSY SHPQIPQGDM 360 NQVLPDSTKA AWLQKQWIES RSFQLEEQKL QIQVEMLELE KQRFKWQKFS KKRDRELEKL 420 KMENERMKLE NERMALELKQ KEMATGFS

Sequence ? help Back to Top

Protein Sequence Length: 448 aa Download sequence

MEGHLSQGGR IPGGASFVGL DLQGSMRAHH QTQHPHNLHQ QHHPNPRQGS MVHPSIHEGF  60
PVKMGTMHNC DQTLSMVDYN KGEKCKNSTS DEDEPSYTEE GIDSHIEANR GKKGSPWQRV  120
KWTDKMVRLL ITAVSYIGED TGSDCGGGGR RKFSALQKKG KWKSVSKVMA ERGFHVSPQQ  180
CEDKFNDLNK RYKKLNDMLG RGTSCQVVEN PALLDVIDYL TEKEKDDVRK ILSSKHLFYE  240
EMCSYHNGNR LHLPHDPALQ HSLQEALRNR DDHDNDDLRR HHRDDLDEDD QDMETDEHDG  300
FEENNASHGD KRGIFGGLGD SVKRLRQGQG GEDFNFSGSL NAQDCSKSSY SHPQIPQGDM  360
NQVLPDSTKA AWLQKQWIES RSFQLEEQKL QIQVEMLELE KQRFKWQKFS KKRDRELEKL  420
KMENERMKLE NERMALELKQ KEMATGFS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G21200.1	1e-167	Trihelix family protein