PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro02_G16815

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

MYB

Protein Properties

Length: 359aa MW: 40438.7 Da PI: 9.785

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro02_G16815	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	53.8	4.5e-17	22	67	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg W + Ede+l +v+q+G +W++Ia++++ gR++k+c++rw++ Ro02_G16815 22 RGHWRPAEDERLRLLVEQYGAQNWNSIAEKLQ-GRSGKSCRLRWFNQ 67 899***************************.*********996 PP
2	Myb_DNA-binding	57.6	2.9e-18	74	117	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 r ++++eE+e+l+ a++ +G++ W+ Iar ++ gRt++ +k++w+ Ro02_G16815 74 RRPFSEEEEERLLAAHRIHGNK-WAMIARLFP-GRTDNAVKNHWHV 117 679*****************.*****.*********96 PP

Sequence ? help Back to Top
Protein Sequence Length: 359 aa Download sequence
MDDYGASPAG SADESKSTSC PRGHWRPAED ERLRLLVEQY GAQNWNSIAE KLQGRSGKSC 60 RLRWFNQLDP RINRRPFSEE EEERLLAAHR IHGNKWAMIA RLFPGRTDNA VKNHWHVIMA 120 RRQREQSKLI CGGNKRSYQD FLISNDSISN TSSSISNTFD SRKLKLSTGF DHNQNNTSTR 180 MFGFRNPGKD REMIMGSSRL KSSSSHNWNF ASMTSSSSIL NSSSSVPGFS RTSEGTNYNI 240 SECLKGDSDH HFVHCINGQY SSSAFLYGRY RGSSSSTTFG LPNPRRINVP ISPFGYLSSS 300 TGTLGDIREQ HGSRMILKKE YLRASSSTTF EDHHHHDSSS VEHHKEVPFI DFLGVGISS

Sequence ? help Back to Top

Protein Sequence Length: 359 aa Download sequence

MDDYGASPAG SADESKSTSC PRGHWRPAED ERLRLLVEQY GAQNWNSIAE KLQGRSGKSC  60
RLRWFNQLDP RINRRPFSEE EEERLLAAHR IHGNKWAMIA RLFPGRTDNA VKNHWHVIMA  120
RRQREQSKLI CGGNKRSYQD FLISNDSISN TSSSISNTFD SRKLKLSTGF DHNQNNTSTR  180
MFGFRNPGKD REMIMGSSRL KSSSSHNWNF ASMTSSSSIL NSSSSVPGFS RTSEGTNYNI  240
SECLKGDSDH HFVHCINGQY SSSAFLYGRY RGSSSSTTFG LPNPRRINVP ISPFGYLSSS  300
TGTLGDIREQ HGSRMILKKE YLRASSSTTF EDHHHHDSSS VEHHKEVPFI DFLGVGISS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G17950.1	1e-61	MYB family protein