PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Ro02_G15479 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
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Family | SRS | ||||||||
Protein Properties | Length: 215aa MW: 23961.8 Da PI: 8.6513 | ||||||||
Description | SRS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF702 | 168.4 | 3.8e-52 | 24 | 172 | 5 | 153 |
DUF702 5 tasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrelkskkqsalsstklssaeskkelet 102 +++C+dCGn+akk+C ++RCRtCCk++gf+C+thvkstWvp +kr+ +++ ++ +++++ + a+ +++ + +k++ +++ + +sa + Ro02_G15479 24 RSRCEDCGNKAKKGCLYMRCRTCCKNNGFQCQTHVKSTWVPLHKRSLLHDERHTDDDHHQQQ-RLATDQEHIIINPNKRQRQHNPSSQSAGL-DRDQE 119 579*****************************************998655555544433333.33333333333334444444433333333.33445 PP DUF702 103 sslPeevsseavfrcvrvssvdd..geeelaYqtavsigGhvfkGiLydqGle 153 +++P+ev+++ f+cvrvssv++ + ++ aYqt+v igGhvfkGiLydqG++ Ro02_G15479 120 AKFPAEVNTMTKFQCVRVSSVNNmvDLDQHAYQTSVIIGGHVFKGILYDQGPD 172 66*********************766689**********************98 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 215 aa Download sequence |
MVRLRQGGSG GGGGGRGGLT MGSRSRCEDC GNKAKKGCLY MRCRTCCKNN GFQCQTHVKS 60 TWVPLHKRSL LHDERHTDDD HHQQQRLATD QEHIIINPNK RQRQHNPSSQ SAGLDRDQEA 120 KFPAEVNTMT KFQCVRVSSV NNMVDLDQHA YQTSVIIGGH VFKGILYDQG PDVHQSCYSI 180 SASAPDQPHL PPPSSSYQLI NPFNAFIPAG YRFND |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G21400.1 | 8e-40 | SRS family protein |