PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro02_G09689
Organism
Rubus occidentalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family bHLH
Protein Properties Length: 417aa    MW: 46013.5 Da    PI: 6.8813
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro02_G09689genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH11.40.00059292338253
                  HHHHHHHHHHHHHHHHHHHHHHHCTSCCC.......TTS-STCHHHHHHHHHHHHH CS
          HLH   2 rrahnerErrRRdriNsafeeLrellPkas....kapskKlsKaeiLekAveYIks 53 
                  ++++ + +r RR ri +++  L ellP+++               +L  ++++Ik 
  Ro02_G09689 292 KQKAQATDRARRVRIAERMTALEELLPQSVeggqE---------FVLDDVIDHIKF 338
                  6778899*********************8533220.........344444444444 PP
Sequence ? help Back to Top
Protein Sequence    Length: 417 aa     Download sequence    
MSVPAALAEP AVGFPCFPAC FSGFSGSLVL GCAAVVVKGR IGFYKLTHTM KKLHHSTYYV  60
PLHNAGRSSQ IALPRRHFLF NSGQNPNSKL ALFTPKPLSR LFSSQKVKAE SVFLLVHMEG  120
QNSHNDPLQL MSLNCGWSVA NDVSHAPEDD LNQKMIMEAG RSVNQTDAFA LPWMIQSPMP  180
AQSSVDFLAE SSTFLPKSPY EDMLERISSV GGIHAAGGIS EFQRDVLYCS SLGKACGSKS  240
TDLSLDMDPW KHHTSWTDTF SGDSFDNVSL VDQKVSVDAS SFPSRPRQSA SKQKAQATDR  300
ARRVRIAERM TALEELLPQS VEGGQEFVLD DVIDHIKFLQ LQIKDLSKSR LGGGTITEPM  360
IFREGYGHYF LHQQMLSEPL EEMIGKLLET NPVAANQLLK DKGLSMVPLD YLNNLNF
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24260.16e-20bHLH family protein