PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro02_G07007

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

NAC

Protein Properties

Length: 616aa MW: 70520 Da PI: 4.5512

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro02_G07007	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	77.7	2.7e-24	11	143	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleev.ikevdiykvePwdLpk.....kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 lp Gf+F Pt +el+ +yL +kv gk+++ ++ ++e ++y++ePwdL ++ ++ +++yfF++ +k + +g++ r++ sg+Wk +v Ro02_G07007 11 LPSGFKFLPTKQELLGYYLLNKVCGKPFKYDSRvMNEYNLYEIEPWDLWInfggpRL-NQGEDLYFFTELKKVSDNGSNVARKAGSGTWKGDTAGITV 107 699**********************8886554999*******742455443.356899**********************99999999 PP NAM 93 lsk..kgelvglkktLvfykgrapkgektdWvmheyrl 128 +++ k++ g+ k + + ++p+ ++ +W+m ey+l Ro02_G07007 108 YDSkdKKKILGTWKRFHYD-PKEPD-QNGSWIMFEYKL 143 9985555557888887765.45555.79******98 PP

Sequence ? help Back to Top
Protein Sequence Length: 616 aa Download sequence
MAPSCVPGLN LPSGFKFLPT KQELLGYYLL NKVCGKPFKY DSRVMNEYNL YEIEPWDLWI 60 NFGGPRLNQG EDLYFFTELK KVSDNGSNVA RKAGSGTWKG DTAGITVYDS KDKKKILGTW 120 KRFHYDPKEP DQNGSWIMFE YKLDDSLFPK SCSDHDLVLS SIRKDRKRKS TEDQMNDTPQ 180 SSHSKAPRVD KHESCVMSSP EKHILNGDTP QSSHSKVPDK HDSSYVMSTY ENQILNDDNN 240 LMASFARWLA TDDEKQPQQH QLVEPNKRFE EQQPSVSLDE REEQRQDQKL LPSPSYFHEQ 300 QQLLGDDLVV SNHHDNFERV ETYESMNIVE PNPSALISTH QPNRRDIPSV LDEIPFDDLF 360 MIDQLLSADN KAPSDSVLVT SQPQQMYCYS AANDNEEMRI TDQAHGISNI VELADTTNDV 420 LSFSLLDENV FNYSKLDDNM FNVTNPEQKN DDIAAVVDES QFDDAFWLDD LIVNDNNRDA 480 PDSELVTSQP LQMEDSEAND NDEMMRIHES HYQTQLGFTH DSNMFMELAD STAHNDVIDF 540 SFLDDNAFRG VINSINCRKR RTLHNDLPIV SPSEVSHCLR HESILSKVAF DSVKTPSNRS 600 NLTLLGLKHT EIKFKT

Sequence ? help Back to Top

Protein Sequence Length: 616 aa Download sequence

MAPSCVPGLN LPSGFKFLPT KQELLGYYLL NKVCGKPFKY DSRVMNEYNL YEIEPWDLWI  60
NFGGPRLNQG EDLYFFTELK KVSDNGSNVA RKAGSGTWKG DTAGITVYDS KDKKKILGTW  120
KRFHYDPKEP DQNGSWIMFE YKLDDSLFPK SCSDHDLVLS SIRKDRKRKS TEDQMNDTPQ  180
SSHSKAPRVD KHESCVMSSP EKHILNGDTP QSSHSKVPDK HDSSYVMSTY ENQILNDDNN  240
LMASFARWLA TDDEKQPQQH QLVEPNKRFE EQQPSVSLDE REEQRQDQKL LPSPSYFHEQ  300
QQLLGDDLVV SNHHDNFERV ETYESMNIVE PNPSALISTH QPNRRDIPSV LDEIPFDDLF  360
MIDQLLSADN KAPSDSVLVT SQPQQMYCYS AANDNEEMRI TDQAHGISNI VELADTTNDV  420
LSFSLLDENV FNYSKLDDNM FNVTNPEQKN DDIAAVVDES QFDDAFWLDD LIVNDNNRDA  480
PDSELVTSQP LQMEDSEAND NDEMMRIHES HYQTQLGFTH DSNMFMELAD STAHNDVIDF  540
SFLDDNAFRG VINSINCRKR RTLHNDLPIV SPSEVSHCLR HESILSKVAF DSVKTPSNRS  600
NLTLLGLKHT EIKFKT

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G61910.1	5e-18	NAC family protein