PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro02_G04547

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

Trihelix

Protein Properties

Length: 555aa MW: 63532.8 Da PI: 6.1871

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro02_G04547	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	99	4e-31	363	447	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 rW+++ev Li +r+++e+++++ lk+plWe+vs+ m++ g++rs+k+Ckekwen+nk+++k+k+++kkr +++s+tc+yf+ql+ Ro02_G04547 363 RWPQSEVESLILLRSKIESKFQEPGLKGPLWEQVSASMASLGYQRSAKRCKEKWENINKYFRKTKDNAKKR-PQQSKTCSYFNQLN 447 8******************************************************************98.99999*****97 PP

Sequence ? help Back to Top
Protein Sequence Length: 555 aa Download sequence
MQSNFEIGEI SNQQHFMDSN IGSPVLPIFF NPQKQNNFQQ QLQPQHHLSH LVHPIPITHE 60 LFQQFQEQQS GMEHWQMGPV NFKLGLNENS GTGEVALDGG DHLLHENNPI FLQPRPQNLG 120 FKSWQSQEFG ARKEPFWKPH ETEGIKQKQT IEGEICKELE SKYRLYAFQR LVTKQTGSGS 180 ALTNENSPKD VDLPMPFGDS HGLNVGPAAT VGVDNVSEAS IEEEISYRKV QKRKRKRRMK 240 EQLSSSTTRF FEGLVKRVMD HQESLHKKYL ALIEKMEKER RDREASWRCQ EAEKHQREAL 300 AKLHEQALAS NREALIVSYI EKITGQKVNL PSRETPFLLQ CDNSNEAMEE ELAPIRVDHT 360 NSRWPQSEVE SLILLRSKIE SKFQEPGLKG PLWEQVSASM ASLGYQRSAK RCKEKWENIN 420 KYFRKTKDNA KKRPQQSKTC SYFNQLNQLY SRAPITNPSS SSYCSSNPSV STGRQGYSEL 480 LEAVIGGRDT GVSQNLSSGN FELIYEMGSN RLDFDGITNG KVEHLQEDRG KVKENQEDDE 540 SMEEEQDTDG DDSDE

Sequence ? help Back to Top

Protein Sequence Length: 555 aa Download sequence

MQSNFEIGEI SNQQHFMDSN IGSPVLPIFF NPQKQNNFQQ QLQPQHHLSH LVHPIPITHE  60
LFQQFQEQQS GMEHWQMGPV NFKLGLNENS GTGEVALDGG DHLLHENNPI FLQPRPQNLG  120
FKSWQSQEFG ARKEPFWKPH ETEGIKQKQT IEGEICKELE SKYRLYAFQR LVTKQTGSGS  180
ALTNENSPKD VDLPMPFGDS HGLNVGPAAT VGVDNVSEAS IEEEISYRKV QKRKRKRRMK  240
EQLSSSTTRF FEGLVKRVMD HQESLHKKYL ALIEKMEKER RDREASWRCQ EAEKHQREAL  300
AKLHEQALAS NREALIVSYI EKITGQKVNL PSRETPFLLQ CDNSNEAMEE ELAPIRVDHT  360
NSRWPQSEVE SLILLRSKIE SKFQEPGLKG PLWEQVSASM ASLGYQRSAK RCKEKWENIN  420
KYFRKTKDNA KKRPQQSKTC SYFNQLNQLY SRAPITNPSS SSYCSSNPSV STGRQGYSEL  480
LEAVIGGRDT GVSQNLSSGN FELIYEMGSN RLDFDGITNG KVEHLQEDRG KVKENQEDDE  540
SMEEEQDTDG DDSDE

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	232	238	KRKRKRR
2	232	239	KRKRKRRM
3	233	238	RKRKRR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G76890.2	1e-49	Trihelix family protein