PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro02_G02294

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

DBB

Protein Properties

Length: 301aa MW: 32793.8 Da PI: 6.4049

Description

DBB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro02_G02294	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	21.4	5.3e-07	4	43	5	38
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeHkg......Ht 38 C+ +++ ++ fC+ ++ lCe C H+ H+ Ro02_G02294 4 QCDVCNKDDASVFCTADEAALCEGCDHRVHHAnklaskHQ 43 7****99****************9964446666676 PP
2	zf-B_box	25	3.8e-08	55	93	2	38
zf-B_box 2 eerkCpeHeekelqlfCedCqqllCedClleeHkg..Ht 38 + C+ ++e ++ lfC++++ lC++C + +H+ Ht Ro02_G02294 55 QSSLCDICQERRAFLFCQQDRAILCRECDVPIHSAneHT 93 5678*****************************657775 PP

Sequence ? help Back to Top
Protein Sequence Length: 301 aa Download sequence
MKIQCDVCNK DDASVFCTAD EAALCEGCDH RVHHANKLAS KHQRFSLIHP SSSKQSSLCD 60 ICQERRAFLF CQQDRAILCR ECDVPIHSAN EHTQKHSRFL FTGVKLSATS AVYTSSSDSA 120 TVTDLKSQIN NKSIVSAATI SSPPSIPKIS ATTTATKNCG NLLLNDGVGS TSSISEYLIE 180 TLPGWHVEDL LDFSSKPFGF CKADDNGVLP FFDDDIESNL SSFSSENMGL WVPQAPCPSL 240 QYSQMGGGGL VGFKDSTKEA ANMNMIKANN NYNRSMWNDV DAFTVPQISP PSVGSKRTRP 300 F

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G75540.1	2e-86	DBB family protein