PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro02_G01425

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

ERF

Protein Properties

Length: 768aa MW: 85412.1 Da PI: 6.472

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro02_G01425	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	55.7	1.2e-17	566	616	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 ++ykGVr ++ +g+Wv+eIr p ++++r++lg++ tae Aa+a++aa ++l+g Ro02_G01425 566 KKYKGVRMRS-WGSWVSEIRAP---NQKTRIWLGSYSTAEAAARAYDAALLCLKG 616 59***998.******9...336**********************997 PP

Sequence ? help Back to Top
Protein Sequence Length: 768 aa Download sequence
MSNSFISFAV TALLSLTILL ANPESQESEP DTPVTRFQNY LRIRTAHPNP DYAAAVSYLK 60 SQAQSIGLQS RTLHFTPNKP LLLLTWPGSD PTLPSFLLNS HLDSVPAEPS KWAHPPFSAH 120 RTPEGDIFAR GAQDDKCIAI QYLEAIRNLK AANFNPIRTV HVSYVPDEEI GGMDGAAKFA 180 VSEEFKELKV GFVLDEGQAN PGDEFRVFYA DRTPWNLIVK AKGMPGHGSR MFDNSAMENL 240 MKSIELMTRF RETQFDEVKA GNAVNSEVIS VNPVYLKSGI VSGDGFAMNM QPSEAEAGFN 300 IRIPPTVDPD LVRKRIVEEW APEARNLTYQ KLVVAIEESL LARWLIREYW VLGLCTKLIE 360 NGPTRDYMGL PLMTPTDDSN PWWSVFKQAI AAAGGKLAKP EILATTTDAR FMRQQGIPTL 420 GFSPMTNTPI LLHEHNEFLK DTIFLKGIKV YESIISALMM FHITGRVALT REDLKQGLAK 480 SLRLVNGYFK QALVFLGSDQ RLDLHPFNPD LIIQFDVSLA PTDVHWYGRT KLTAMVKTEQ 540 RIQLPSETPS KPLMPSSKTT SRDKKKKYKG VRMRSWGSWV SEIRAPNQKT RIWLGSYSTA 600 EAAARAYDAA LLCLKGSSAN LNFPVSASSQ FVPRENTMMS PKSIQRVAAA AANSFNHDNA 660 TTTTASSPPS PPPHDPSSSS SSVVSSPSMS SSSPSINLVD DDMSSLMGSF GPYTPATYDH 720 HHQVDYEVPM CPMESWNNFD DIFNGALLDP PMNYDFYEET DIRLWSFC

Sequence ? help Back to Top

Protein Sequence Length: 768 aa Download sequence

MSNSFISFAV TALLSLTILL ANPESQESEP DTPVTRFQNY LRIRTAHPNP DYAAAVSYLK  60
SQAQSIGLQS RTLHFTPNKP LLLLTWPGSD PTLPSFLLNS HLDSVPAEPS KWAHPPFSAH  120
RTPEGDIFAR GAQDDKCIAI QYLEAIRNLK AANFNPIRTV HVSYVPDEEI GGMDGAAKFA  180
VSEEFKELKV GFVLDEGQAN PGDEFRVFYA DRTPWNLIVK AKGMPGHGSR MFDNSAMENL  240
MKSIELMTRF RETQFDEVKA GNAVNSEVIS VNPVYLKSGI VSGDGFAMNM QPSEAEAGFN  300
IRIPPTVDPD LVRKRIVEEW APEARNLTYQ KLVVAIEESL LARWLIREYW VLGLCTKLIE  360
NGPTRDYMGL PLMTPTDDSN PWWSVFKQAI AAAGGKLAKP EILATTTDAR FMRQQGIPTL  420
GFSPMTNTPI LLHEHNEFLK DTIFLKGIKV YESIISALMM FHITGRVALT REDLKQGLAK  480
SLRLVNGYFK QALVFLGSDQ RLDLHPFNPD LIIQFDVSLA PTDVHWYGRT KLTAMVKTEQ  540
RIQLPSETPS KPLMPSSKTT SRDKKKKYKG VRMRSWGSWV SEIRAPNQKT RIWLGSYSTA  600
EAAARAYDAA LLCLKGSSAN LNFPVSASSQ FVPRENTMMS PKSIQRVAAA AANSFNHDNA  660
TTTTASSPPS PPPHDPSSSS SSVVSSPSMS SSSPSINLVD DDMSSLMGSF GPYTPATYDH  720
HHQVDYEVPM CPMESWNNFD DIFNGALLDP PMNYDFYEET DIRLWSFC

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G21910.1	3e-37	ERF family protein