PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Ro02_G00697 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
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Family | ERF | ||||||||
Protein Properties | Length: 248aa MW: 26863.8 Da PI: 4.8552 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 59.4 | 8.5e-19 | 58 | 108 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 + y+GVr + +g+Wv+eIr+p++ + r++lg++ t+e+Aa+a++ a+++++g Ro02_G00697 58 PVYRGVRMRN-WGKWVSEIREPRK---KSRIWLGTYPTPEMAARAHDVAALSIKG 108 68*****998.**********843...6***********************9987 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 248 aa Download sequence |
MSCSETPVGS EETESSSSNS SSSPPSSPGS LRNKPPSSPE LEPINKKIKR VRDSSKHPVY 60 RGVRMRNWGK WVSEIREPRK KSRIWLGTYP TPEMAARAHD VAALSIKGNS AILNFPELSD 120 SLPRPVSLAP RDVQAAASKA AQMHQFDSKT SMSATSSSSS LSSLVSAIDN LSTESEELSE 180 IVALPSLGTS YESYELTSEF VLVDSADDEW VYPPPWLQHM GDCNVYVCGD LGTSANSTVG 240 FEDSAFIN |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G11590.1 | 3e-71 | ERF family protein |