PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro02_G00686
Organism
Rubus occidentalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family GATA
Protein Properties Length: 366aa    MW: 40576 Da    PI: 6.5046
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro02_G00686genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA55.11e-17249283135
         GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                  C +C t kTp+WR gp g+ktLCnaCG++y++ +l
  Ro02_G00686 249 CLHCATDKTPQWRTGPMGPKTLCNACGVRYKSGRL 283
                  99*****************************9885 PP
Sequence ? help Back to Top
Protein Sequence    Length: 366 aa     Download sequence    
MEAPEYFQNS FCPQFVTEKR HSLDNNKTNN GGDSFMVEDL LDFSNDDAVI TDGAAFDTVT  60
GNSTDSSTLT VIDSSCNSSS LSGCEPANFA ADFGSRNFAE VPFSSDLCVP YDDLAELEWQ  120
LSSFSEESFS SEDLQKLQLI SGMKARPDEA ASETRQFQPD TNNSNPIFNP DILVPAKARS  180
KRSRAAPCNW TSRLLLLSPT ESSPESSDVV VSEPQPLPPA ASNFGKKTLK AAPKKKENPE  240
GGPGDGRKCL HCATDKTPQW RTGPMGPKTL CNACGVRYKS GRLVPEYRPA ASPTFVLTKH  300
SNSHRKVLEL RRQKEMVRSQ QQYVHHQPPQ HHHHHHHHNP NMIFDLSNGG DYLIHQHVGP  360
DFRQLI
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25830.14e-76GATA family protein