PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro01_G29744
Organism
Rubus occidentalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family ERF
Protein Properties Length: 286aa    MW: 31887.9 Da    PI: 9.9548
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro01_G29744genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP265.97.8e-2191141155
          AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55 
                  s+y+GVr+++ +g+W+AeIrdp     +  +r++lg+f taeeAa+a+++a+ +++g
  Ro01_G29744  91 SKYRGVRQRP-WGKWAAEIRDP-----HrkARVWLGTFQTAEEAARAYDKAAVEFRG 141
                  89********.**********6.....236**********************99987 PP
Sequence ? help Back to Top
Protein Sequence    Length: 286 aa     Download sequence    
MPNSNSSGMP NDQEHAIIVS TLKQVIGGRN SGHSQPQPHS SSVPCGTKKV EISISDGNTC  60
QDCRIDGCLG CDFFPPSEPD KDKGKRKMKK SKYRGVRQRP WGKWAAEIRD PHRKARVWLG  120
TFQTAEEAAR AYDKAAVEFR GDKAKLNFPV TTSDHDNTGT SSSAAFNKQS TETMQQNAHR  180
KVQVNASTVK SSNQGEGESS PEPIKHRETS SKIKSPNTSK KLLWVAVSWF LFFPASCFNE  240
SSTTFMNLLT KEELMKAFHV IDRDNNVLLI WNLPLDFISI KKISNN
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G34410.15e-27ERF family protein