PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro01_G29743
Organism
Rubus occidentalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family ERF
Protein Properties Length: 224aa    MW: 24806.4 Da    PI: 5.3957
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro01_G29743genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP266.64.9e-2196146155
          AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                  s+y+GVr+++ +g+W+AeIrdp+    r +r++lg+f taeeAa+a+++a+ +++g
  Ro01_G29743  96 SKYRGVRQRP-WGKWAAEIRDPR----RaARVWLGTFQTAEEAARAYDKAAVEFRG 146
                  89********.**********82....48**********************99987 PP
Sequence ? help Back to Top
Protein Sequence    Length: 224 aa     Download sequence    
MSSYSGGMPN EQEHAIIVTA LKQVISGGIS GHSQLQPQQQ LPYATSSIPS GTKEVQISIS  60
DGDTCHECKI DGCLGCDFFP PSEQDKDKGK KKMKTSKYRG VRQRPWGKWA AEIRDPRRAA  120
RVWLGTFQTA EEAARAYDKA AVEFRGDKAK LNFPLNTSDH DNTGTSSTAA FNKQNMKAMQ  180
QNADLEVQAN VSNVNSANQE EGESNADKEE DIDRFIWDML KDND
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G34410.13e-31ERF family protein