PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro01_G29742
Organism
Rubus occidentalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family ERF
Protein Properties Length: 228aa    MW: 25248.4 Da    PI: 7.9312
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro01_G29742genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.91.4e-1995145155
          AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                  s+y+GVr+++ +g+W+AeIrdp+    r +r++lg+f taeeAa a+++a+ k++g
  Ro01_G29742  95 SKYRGVRQRP-WGKWAAEIRDPR----RaARVWLGTFQTAEEAAGAYDKAAVKFRG 145
                  89********.**********82....48**********************99987 PP
Sequence ? help Back to Top
Protein Sequence    Length: 228 aa     Download sequence    
MPSHSGGMSK EHEHAIMVSA LKQVISGGHF HSQPPQQQQL HYATSSVPSG TKKVVIFISD  60
SDTCHVCRID GCLGCDFFPP SKQDKDKGKK KMKKSKYRGV RQRPWGKWAA EIRDPRRAAR  120
VWLGTFQTAE EAAGAYDKAA VKFRGDKAKL NFPLTTGTGS STSAAFNKQR METMQQNEVQ  180
VNAKSTTVTS ANEEEEGDSI AVMGEEIDRF ICDVLKDDDG DHEELKLE
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G34410.11e-31ERF family protein