PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro01_G29739

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

ERF

Protein Properties

Length: 727aa MW: 80659.9 Da PI: 6.9312

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro01_G29739	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	56.5	6.7e-18	378	427	2	55
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr++ +g+W+AeIrdp + +r++lg+f taeeAa+a+++a+ +++g Ro01_G29739 378 KYRGVRQKL-WGKWAAEIRDP-----HraARVWLGTFQTAEEAARAYDKAAVEFRG 427 8***655.******7.....338********************99987 PP

Sequence ? help Back to Top
Protein Sequence Length: 727 aa Download sequence
MAFQGYAIKH GFASDISMLN SLISMYCTVE TLMLGAMPKR SVVSWNALMP GFKNHNLQNE 60 VLVIFGQMIK DDQRPNYVTS LHLLPACYTQ LQGKSIHAVE IRTGIPHETP LLSSLMFIYA 120 RFDNHEGCFL LFKMGNMDDI SLWNAIMSVQ IQAKYSENAV VFFYSLLQMG LQPDNITLPN 180 LVSACAQLNS LSLANSVMDY IIRKGFDKDL QCIDRCGNIS VARQLFNGLV KKDAVSGNVM 240 INGYGLNGNG EAVLDLFLHM KLSGIRPNGI TFSSVLSACS HSGLVEQGRM VSKSMAEHGI 300 VPQMEHYACM VDLLGRTGNL TEAYGIVKGL PCKPALSLLE FLLGACRIHG NVELGEKIGG 360 LLSELDPENS RPHMKKGKYR GVRQKLWGKW AAEIRDPHRA ARVWLGTFQT AEEAARAYDK 420 AAVEFRGDKA KLNFPLNTSD HDNTGSSSTA AFNKQSMETM QQNADLEVQA NVSNVNSANQ 480 EEGESNADLA AGRLVFEAMP KRSVVSWNAL MTGFKNHNLQ NEVLVIFGQM IKDDQRPNYV 540 TALNLLPACY IQLQEHVFPR KPLFFHHSCL CMQDLTTMRD CKNKQNIYSE NAVGFFYSLL 600 QMGLQLDNVT LLNLVSSCAQ LNSLSLANSV MDYIIRKGFD KDLVIINALI DVETYRLRDS 660 CLMDAVSGNV MINGYGLNGN GEVVLDLFLH MKLSGIRPNG ITFSSVLSAC SHYGLVEQDT 720 NLWQNMV

Sequence ? help Back to Top

Protein Sequence Length: 727 aa Download sequence

MAFQGYAIKH GFASDISMLN SLISMYCTVE TLMLGAMPKR SVVSWNALMP GFKNHNLQNE  60
VLVIFGQMIK DDQRPNYVTS LHLLPACYTQ LQGKSIHAVE IRTGIPHETP LLSSLMFIYA  120
RFDNHEGCFL LFKMGNMDDI SLWNAIMSVQ IQAKYSENAV VFFYSLLQMG LQPDNITLPN  180
LVSACAQLNS LSLANSVMDY IIRKGFDKDL QCIDRCGNIS VARQLFNGLV KKDAVSGNVM  240
INGYGLNGNG EAVLDLFLHM KLSGIRPNGI TFSSVLSACS HSGLVEQGRM VSKSMAEHGI  300
VPQMEHYACM VDLLGRTGNL TEAYGIVKGL PCKPALSLLE FLLGACRIHG NVELGEKIGG  360
LLSELDPENS RPHMKKGKYR GVRQKLWGKW AAEIRDPHRA ARVWLGTFQT AEEAARAYDK  420
AAVEFRGDKA KLNFPLNTSD HDNTGSSSTA AFNKQSMETM QQNADLEVQA NVSNVNSANQ  480
EEGESNADLA AGRLVFEAMP KRSVVSWNAL MTGFKNHNLQ NEVLVIFGQM IKDDQRPNYV  540
TALNLLPACY IQLQEHVFPR KPLFFHHSCL CMQDLTTMRD CKNKQNIYSE NAVGFFYSLL  600
QMGLQLDNVT LLNLVSSCAQ LNSLSLANSV MDYIIRKGFD KDLVIINALI DVETYRLRDS  660
CLMDAVSGNV MINGYGLNGN GEVVLDLFLH MKLSGIRPNG ITFSSVLSAC SHYGLVEQDT  720
NLWQNMV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G50080.1	1e-23	ERF family protein