PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro01_G24592

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

MYB

Protein Properties

Length: 347aa MW: 38465.6 Da PI: 7.3224

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro01_G24592	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	55	1.9e-17	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd +lv +++++G+g+W++++ g+ R+ k+c++rw +yl Ro01_G24592 14 KGPWTPEEDIILVSYIQEHGPGNWRAVPTNTGLLRCSKSCRLRWTNYL 61 79****************************99**********97 PP
2	Myb_DNA-binding	45.6	1.6e-14	67	112	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg++T+ E+ ++++ ++lG++ W++Ia++++ Rt++++k++w+++l Ro01_G24592 67 RGNFTPHEEGMIIHLQALLGNK-WAAIASYLP-QRTDNDIKNYWNTHL 112 89******************.*****.**********996 PP

Sequence ? help Back to Top
Protein Sequence Length: 347 aa Download sequence
MGRPPCCEKV GIKKGPWTPE EDIILVSYIQ EHGPGNWRAV PTNTGLLRCS KSCRLRWTNY 60 LRPGIKRGNF TPHEEGMIIH LQALLGNKWA AIASYLPQRT DNDIKNYWNT HLKKKLKKIQ 120 SAVGHHHQYP QAHNNIFGSS ISDSTTSNST HHQYPHSNNV NDISHASTRT TTTSLSLRSI 180 NQSSSSSGGI YASSTENISR LLEGWMRSSP KSTNANLVTK PSHDHDHEEN PKGDEEQEAA 240 GCDHDLLSHE ALESILSFDN LNNVNAASWD RSSTTNCDSS SNKQVSHPQS GTTAVVANEK 300 NKHIIRACES TNTTPPLSFL EKWLLDESAA GQVLEDRMME LSPISSV

Sequence ? help Back to Top

Protein Sequence Length: 347 aa Download sequence

MGRPPCCEKV GIKKGPWTPE EDIILVSYIQ EHGPGNWRAV PTNTGLLRCS KSCRLRWTNY  60
LRPGIKRGNF TPHEEGMIIH LQALLGNKWA AIASYLPQRT DNDIKNYWNT HLKKKLKKIQ  120
SAVGHHHQYP QAHNNIFGSS ISDSTTSNST HHQYPHSNNV NDISHASTRT TTTSLSLRSI  180
NQSSSSSGGI YASSTENISR LLEGWMRSSP KSTNANLVTK PSHDHDHEEN PKGDEEQEAA  240
GCDHDLLSHE ALESILSFDN LNNVNAASWD RSSTTNCDSS SNKQVSHPQS GTTAVVANEK  300
NKHIIRACES TNTTPPLSFL EKWLLDESAA GQVLEDRMME LSPISSV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G08810.1	1e-91	MYB family protein