PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Ro01_G18494 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
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Family | bHLH | ||||||||
Protein Properties | Length: 213aa MW: 23716.8 Da PI: 10.9098 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 35.1 | 2.4e-11 | 46 | 92 | 3 | 54 |
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 ++h+e E+rRR riN+ ++ Lr++lP++ K++Ka++L ++v+ +++L Ro01_G18494 46 KKHSESEKRRRTRINNQYAVLRKILPNL-----IKMDKASVLAETVRQVRDL 92 68*************************9.....6************988877 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 213 aa Download sequence |
MQMRRSVPSY FSKQIGFPQR YGVDPVNSKN FFKPKSTAEA KVLAAKKHSE SEKRRRTRIN 60 NQYAVLRKIL PNLIKMDKAS VLAETVRQVR DLKKVVGEIG AACRGSGSDE CVIPSVVNKL 120 SLEKCVGEQE GLVKATFSCE DRPGLISDMT RELRSVKGRV VRAEMVTVGG RTKSVLWVKG 180 LGAGSEGMVW LKKALNKVVT DRARIFQKLH LAE |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G38070.1 | 8e-42 | bHLH family protein |