PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AT4G38070.1
Organism
Arabidopsis thaliana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family bHLH
Protein Properties Length: 1513aa    MW: 175038 Da    PI: 5.2987
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AT4G38070.1genomeTAIRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH40.54.8e-1313511397354
                   HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
          HLH    3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54  
                   ++h+ +ErrRR riNs f++Lr++lP++      K +Ka++L ++v+Y ++L
  AT4G38070.1 1351 KKHSDAERRRRLRINSQFATLRTILPNL-----VKQDKASVLGETVRYFNEL 1397
                   68*************************9.....7**************9988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474592.49E-1213401403IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.23713481397IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.63E-713511402No hitNo description
PfamPF000109.6E-1113511397IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.1E-1213521402IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003539.5E-1313541403IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005739Cellular Componentmitochondrion
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000013anatomycauline leaf
PO:0000037anatomyshoot apex
PO:0000230anatomyinflorescence meristem
PO:0008019anatomyleaf lamina base
PO:0009005anatomyroot
PO:0009006anatomyshoot system
PO:0009009anatomyplant embryo
PO:0009010anatomyseed
PO:0009025anatomyvascular leaf
PO:0009029anatomystamen
PO:0009031anatomysepal
PO:0009032anatomypetal
PO:0009046anatomyflower
PO:0009047anatomystem
PO:0009052anatomyflower pedicel
PO:0020030anatomycotyledon
PO:0020038anatomypetiole
PO:0020100anatomyhypocotyl
PO:0025022anatomycollective leaf structure
PO:0001054developmental stagevascular leaf senescent stage
PO:0001078developmental stageplant embryo cotyledonary stage
PO:0001081developmental stagemature plant embryo stage
PO:0001185developmental stageplant embryo globular stage
PO:0004507developmental stageplant embryo bilateral stage
PO:0007064developmental stageLP.12 twelve leaves visible stage
PO:0007095developmental stageLP.08 eight leaves visible stage
PO:0007098developmental stageLP.02 two leaves visible stage
PO:0007115developmental stageLP.04 four leaves visible stage
PO:0007611developmental stagepetal differentiation and expansion stage
PO:0007616developmental stageflowering stage
Sequence ? help Back to Top
Protein Sequence    Length: 1513 aa     Download sequence    Send to blast
MEKVYEELDE VKAVNEKLRI DYRNKTELLE NLKKVQNEQL IEIREARLVN EKHGFEIEEK  60
SREIAELKRA NEELQRCLRE KDSVVKRVND VNDKLRANGE DKYREFEEEK RNMMSGLDEA  120
SEKNIDLEQK NNVYRAEIEG LKGLLAVAET KRIEAEKTVK GMKEMRGRDD VVVKMEEEKS  180
QVEEKLKWKK EQFKHLEEAY EKLKNLFKDS KKEWEEEKSK LLDEIYSLQT KLDSVTRISE  240
DLQKKLQMCN GALTQEETRR KHLEIQVSEF KAKYEDAFAE CQDARTQLDD LAGKRDWEVA  300
ELRQTLSMKD AYFKEMKYEN GKLEQENREL LGSLKELQEA TIQGSGNSAL SKLKNKFRNL  360
ENIHKNCSAN LRSKEAEWSS QVEKMVEEIN DYKLQLQSKE AALKEVELEL ENCRSSTAKM  420
RLQYEEISIM FLVLSRTVSE AQSRLANAKD KQIKDEKREG NCYSLLMEQL DQKNAALAKA  480
QMEIKEERES VACLLKRIEM LDLFENQNIQ MQKEVERFKE MVEESSRFQT QMQEKMKEAE  540
NDYEEKLLQV CDALDNTNID LVAEREKVVS LTRQIESLGT VKEKNLVMEK ETQEYKEMLE  600
ESEKCRVLLE EQISQLESDS NENIRELCSK VDIAYAKLAE EVEKTASLVR KSESIDLNEE  660
HRQRELDHYK EMLEESTKTQ LLLQEKVVDV ENDSKRKLAD VSEALEIANS ELSDKTSEVF  720
QIEFQLWVWK SIAKRLKAEL EQNQNLRKRV EASLLEQVGV GEAIKQEKNE LVHKLKVISH  780
ARSSDSEKKE SLMRDKDEML ESLQREVELL EQDSLRRELE DVVLAHMIGE RELQNEREIC  840
ALQQKDQDLC EVKHELEGSL KSVSLLLQQK QNEVNMLRKT WEKLTARQIL TAVETESKKM  900
MIIELEGEIS SLSQKLETSN ESVSCFRQEA TKSRAELETK QTELKEVTTQ MQEKLRTSEA  960
EKTELVKEVA SLSTEKRNLL SFISEMEDGM LKLYDGDTKL MKTLERVTQC CDGFGKENNN  1020
GETIGSPRLA MKHEEDVVTE DREGASQNRT APDLKPIETC RKLLKSREFL SVRYIIQVNQ  1080
LLKSKRHDDD DQFEQVEAIC DLLIAAENRL PNGLKDYYGM IRANRFGPVL LEDFEKLTKL  1140
LDKKHNYFPF SQEAADKASL AWSLLSKPPI KAHYDLAISA FFGECSKVKR KIFIPKKQIE  1200
VVVISDDDDE EEFSCLKISL NRYYYYDYLL FVFIYIYIHN KFNIPSNVLL SPSLCVTMVL  1260
LHHVSLSHYQ NSSSLFSSSS ESILCLFLVL CVMQLEQGMR PISRCYNPTA YSTTMGRSFF  1320
AGAATSSKLF SRGFSVTKPK SKTESKEVAA KKHSDAERRR RLRINSQFAT LRTILPNLVK  1380
QDKASVLGET VRYFNELKKM VQDIPTTPSL EDNLRLDHCN NNRDLARVVF SCSDREGLMS  1440
EVAESMKAVK AKAVRAEIMT VGGRTKCALF VQGVNGNEGL VKLKKSLKLV VNGKSSSEAK  1500
NNNNGGSLLI QQQ
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO425674950.0
Genevisible253023_at1e-154
Expression AtlasAT4G38070-
AtGenExpressAT4G38070-
ATTED-IIAT4G38070-
Cis-element ? help Back to Top
SourceLink
PlantRegMapAT4G38070.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
T-DNA ExpressAT4G38070
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL0355380.0AL035538.1 Arabidopsis thaliana DNA chromosome 4, BAC clone F20D10 (ESSA project).
GenBankAL1615920.0AL161592.2 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 88.
GenBankCP0026870.0CP002687.1 Arabidopsis thaliana chromosome 4 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001328886.10.0basic helix loop helix (bHLH) DNA-binding superfamily protein
SwissprotP0CB230.0Y4862_ARATH; Uncharacterized protein At4g38062
TrEMBLA0A178UW140.0A0A178UW14_ARATH; Uncharacterized protein
STRINGAT4G38070.10.0(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM959266
Publications ? help Back to Top
  1. Riechmann JL, et al.
    Arabidopsis transcription factors: genome-wide comparative analysis among eukaryotes.
    Science, 2000. 290(5499): p. 2105-10
    [PMID:11118137]
  2. Toledo-Ortiz G,Huq E,Quail PH
    The Arabidopsis basic/helix-loop-helix transcription factor family.
    Plant Cell, 2003. 15(8): p. 1749-70
    [PMID:12897250]
  3. Heazlewood JL, et al.
    Experimental analysis of the Arabidopsis mitochondrial proteome highlights signaling and regulatory components, provides assessment of targeting prediction programs, and indicates plant-specific mitochondrial proteins.
    Plant Cell, 2004. 16(1): p. 241-56
    [PMID:14671022]
  4. Czechowski T,Stitt M,Altmann T,Udvardi MK,Scheible WR
    Genome-wide identification and testing of superior reference genes for transcript normalization in Arabidopsis.
    Plant Physiol., 2005. 139(1): p. 5-17
    [PMID:16166256]