PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro01_G17065

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

Nin-like

Protein Properties

Length: 992aa MW: 109277 Da PI: 5.2409

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro01_G17065	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	92.7	2.7e-29	593	644	1	52
RWP-RK 1 aekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 aek++sl++l++yFs+++kdAAk++gvc+T+LKriCRq+GI+RWP+Rki+++ Ro01_G17065 593 AEKNVSLSVLQQYFSGSLKDAAKSIGVCPTTLKRICRQHGISRWPSRKINKV 644 589***********************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 992 aa Download sequence
MENRFSCRDK GGDQGSSSGG RMESLGGETR NSISEDMFNN IAELMNFDTY AGWCSGPETM 60 EQIATTYGVP SCPSATYAPL DALNFTEQNC GALPITEGGG TFNQPGSSLN CGDRTVFQPM 120 DTTQFGAHDE VAKLKNDSFQ QNNVMDMANY VIPRPIGWSL DEKMLKALSL FKESSGGGIL 180 AQVWVPLKHG DQLFLSTCEQ PYLLDHILAG YREVSRMFTF SADEKQNSSL GLPGRVFVSK 240 VPEWTSNVSY YNKAEYLRVE HAADHQVRGS IALPVFDLNP EMSCCAVLEL VSTKDKSNFD 300 AEMVVVCDAL QAVNLGTTTP HRLLPGCLSM SQRAALTEIT DVLRAVCHAH TLPLALTWIP 360 CCYCEGAGED IRSVRVREGV THSNEKCILC IEETACYIND RAMQGFVHAC AEHHLEEGNG 420 IAGKALQSNH PFFIHDVKVY DICDYPLVHH ARKFGLNAAV AIRLRSTYTG DDDYILEFFL 480 PVNMKGSSEQ QLLLNNLSGT MQRICKSLRT VSDAELVGVE GSNTGFQKEA IPNPPQTSWR 540 GSQTTSSDSE FKLTEKMPSN VFNRRDGGGE VDYPSEQAPI GSRRQVEKKR STAEKNVSLS 600 VLQQYFSGSL KDAAKSIGVC PTTLKRICRQ HGISRWPSRK INKVNRSLRK IQTVLDSVQG 660 VEGGLKYDPT TGGFVATGSI IQEFDAQKSL YFPEKNLPAQ NSVPVTKYPI SEPSMSCKDE 720 RLEIKLEEGD CCMKGRMLIP TAHQEEEELK KLNIPPTEFS MDSKPIAIDF GSCQPTDHDT 780 LPHSCPESAF RESYLVNEVN KWGQSKGSLK LENSDSHFLS QSSSSFAAAD EMDIGVDRDG 840 GVVNCNQHSS SSMTDSSISS GSMMHGCSSS SQSFEERKYP KVKASNAENG SKIIVKATYK 900 EDMIRFKFDP SGGCLKLYEE VAKRLKLQDG TFQLKYLDDE QEWVMLVSDA DLLECLEILD 960 DIGTHSVKFM VRDIPFGVSS SGSSNCFLAG GL

Sequence ? help Back to Top

Protein Sequence Length: 992 aa Download sequence

MENRFSCRDK GGDQGSSSGG RMESLGGETR NSISEDMFNN IAELMNFDTY AGWCSGPETM  60
EQIATTYGVP SCPSATYAPL DALNFTEQNC GALPITEGGG TFNQPGSSLN CGDRTVFQPM  120
DTTQFGAHDE VAKLKNDSFQ QNNVMDMANY VIPRPIGWSL DEKMLKALSL FKESSGGGIL  180
AQVWVPLKHG DQLFLSTCEQ PYLLDHILAG YREVSRMFTF SADEKQNSSL GLPGRVFVSK  240
VPEWTSNVSY YNKAEYLRVE HAADHQVRGS IALPVFDLNP EMSCCAVLEL VSTKDKSNFD  300
AEMVVVCDAL QAVNLGTTTP HRLLPGCLSM SQRAALTEIT DVLRAVCHAH TLPLALTWIP  360
CCYCEGAGED IRSVRVREGV THSNEKCILC IEETACYIND RAMQGFVHAC AEHHLEEGNG  420
IAGKALQSNH PFFIHDVKVY DICDYPLVHH ARKFGLNAAV AIRLRSTYTG DDDYILEFFL  480
PVNMKGSSEQ QLLLNNLSGT MQRICKSLRT VSDAELVGVE GSNTGFQKEA IPNPPQTSWR  540
GSQTTSSDSE FKLTEKMPSN VFNRRDGGGE VDYPSEQAPI GSRRQVEKKR STAEKNVSLS  600
VLQQYFSGSL KDAAKSIGVC PTTLKRICRQ HGISRWPSRK INKVNRSLRK IQTVLDSVQG  660
VEGGLKYDPT TGGFVATGSI IQEFDAQKSL YFPEKNLPAQ NSVPVTKYPI SEPSMSCKDE  720
RLEIKLEEGD CCMKGRMLIP TAHQEEEELK KLNIPPTEFS MDSKPIAIDF GSCQPTDHDT  780
LPHSCPESAF RESYLVNEVN KWGQSKGSLK LENSDSHFLS QSSSSFAAAD EMDIGVDRDG  840
GVVNCNQHSS SSMTDSSISS GSMMHGCSSS SQSFEERKYP KVKASNAENG SKIIVKATYK  900
EDMIRFKFDP SGGCLKLYEE VAKRLKLQDG TFQLKYLDDE QEWVMLVSDA DLLECLEILD  960
DIGTHSVKFM VRDIPFGVSS SGSSNCFLAG GL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G43500.1	0.0	Nin-like family protein