PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro01_G14731
Organism
Rubus occidentalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family WRKY
Protein Properties Length: 313aa    MW: 34833.8 Da    PI: 6.3122
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro01_G14731genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY105.13.7e-33167224259
                  --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
         WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                  +Dgy+WrKYGqK vk+s+fprsY+rCtsa+C+vkk+ver+ +dp +v++tYeg+H+h+
  Ro01_G14731 167 EDGYRWRKYGQKAVKNSPFPRSYFRCTSASCNVKKRVERCVDDPGIVVTTYEGQHTHP 224
                  8********************************************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 313 aa     Download sequence    
MEKKDHLIKM EDNTRCGSAS FSETRADYSY PFSGMFDISQ GDEKDYSLGF MELLGLQDLC  60
PNSLFDLPQI TTAPQILPTI SMNIAKELSL NPSTPNSSSI SSVSSEALNE EQQTNDKSAA  120
DQEEDDDGDQ PEPKKGLKAN QKKKTSEKRP REPRFAFMTK SEVDHLEDGY RWRKYGQKAV  180
KNSPFPRSYF RCTSASCNVK KRVERCVDDP GIVVTTYEGQ HTHPSPLLMP PPPPPPTHNS  240
IVMPRTLFSH YQHQQGYNFG FSTTPNRSSL NERRFCSPAG GSALLATDHG LLQDIVPSNM  300
LNQGYPTTGT GGN
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47260.13e-44WRKY family protein