PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro01_G12235
Organism
Rubus occidentalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family HD-ZIP
Protein Properties Length: 327aa    MW: 37273 Da    PI: 4.8963
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro01_G12235genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox59.45.9e-1958111356
                  --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
     Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                  k+++++ eq+++Le+ Fe ++++  e++ +LA++lgL+ rqV vWFqNrRa++k
  Ro01_G12235  58 KKRRLSVEQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWK 111
                  56689************************************************9 PP
2HD-ZIP_I/II133.29.4e-4357149193
  HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 
                  ekkrrls eqvk+LE++Fe e+kLeperKv+la+eLglqprqvavWFqnrRAR+ktkqlE+dy +Lk++yd+lk + ++L++++++L++e+ke
  Ro01_G12235  57 EKKRRLSVEQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTKQLERDYGVLKANYDSLKLNFDSLQHDNQALHKEIKE 149
                  69****************************************************************************************997 PP
Sequence ? help Back to Top
Protein Sequence    Length: 327 aa     Download sequence    
MKRLSSSDSL GALISICPTT TDEHSPRNNH VYSRDFQSML DGLDEEGCVE ESGHVAEKKR  60
RLSVEQVKAL EKNFEVENKL EPERKVKLAQ ELGLQPRQVA VWFQNRRARW KTKQLERDYG  120
VLKANYDSLK LNFDSLQHDN QALHKEIKEL KAKFQEENTE SNHSVKEEQM VLANESNYKV  180
VMEQSKPQSP DTSIPVSEPK ELNFESFNNT NSNGVVGVEV SLFPDFKDGS SDSDSSAILN  240
EDHNSPNGTI NHHQLMPDSN SLKFNCSASS SSPSSSSMNC FQFQKSSYQP QFVKIEEHNF  300
FSSEEACNFF SDEQAPSLQW YCPDQWN
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15887KKRRLSVEQVKALEKNFEVENKLEPERKVK
2106114RRARWKTKQ
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22430.14e-82HD-ZIP family protein