PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro01_G11629
Organism
Rubus occidentalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family ERF
Protein Properties Length: 404aa    MW: 43583 Da    PI: 6.8861
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro01_G11629genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2643e-20203252255
          AP2   2 gykGVrwdkkrgrWvAeIrd.psengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                  +y+GVr+++ +g+W+AeIrd +     + +r++lg+f+tae Aa+a++ a+++++g
  Ro01_G11629 203 KYRGVRQRP-WGKWAAEIRDpF-----KaARVWLGTFDTAEAAAEAYDTAALRFRG 252
                  8********.**********66.....56*************************98 PP
Sequence ? help Back to Top
Protein Sequence    Length: 404 aa     Download sequence    
MCFPKVANPS RDRDDERAAA AEQGNETDDQ RDLIEEWLLF EPVLFSQQHQ QPQQQQRRGG  60
GGGGGEGIVA ASTQMLFRLD REREMSAMVS ALTHVVAGEE QTRLDEINCL DSSAGSGSWG  120
GVGNKRGREE GGGGGQMTSE SVTRLCRAFG EFPKQNTSSS SVSLLPGSST RAPRTTSTTP  180
PPTHTSAYEY STPQISDQPV RRKYRGVRQR PWGKWAAEIR DPFKAARVWL GTFDTAEAAA  240
EAYDTAALRF RGNKAKLNFP ENVRLRSSSS SSATQNPMTT QLTASGAPTT LLSIPTSTEP  300
IVHTQPAEFH INMQHQQRAP MSLYDQMVLL SSSSSPSASS SSSIASSVSS SPPPPVFSSL  360
FSTQTTSPVL LRQAAGDQST GADFPMQPQW SSSSGDHYST PSSR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G64750.12e-26ERF family protein