PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro01_G11166

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

MYB

Protein Properties

Length: 359aa MW: 40186.1 Da PI: 8.4468

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro01_G11166	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	46.3	9.7e-15	14	62	1	48
TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48 +g+W++eEd +l+ ++ + G+g +W + ++++g++R++k+c++rw++yl Ro01_G11166 14 KGPWSPEEDAKLKSYIDKQGTGgNWIALPQKIGLKRCGKSCRLRWLNYL 62 79*********************************************97 PP
2	Myb_DNA-binding	38	3.9e-12	69	111	2	46
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 g +++eEd ++ + G++ W+ Ia+ ++ gRt++++k++w++ Ro01_G11166 69 GGFSEEEDNIICSLYINIGSR-WSIIAAQLP-GRTDNDIKNYWNT 111 569****************.*****.*********97 PP

Sequence ? help Back to Top
Protein Sequence Length: 359 aa Download sequence
MGRAPCCDKT KVKKGPWSPE EDAKLKSYID KQGTGGNWIA LPQKIGLKRC GKSCRLRWLN 60 YLRPNIKHGG FSEEEDNIIC SLYINIGSRW SIIAAQLPGR TDNDIKNYWN TRLKKKLLGK 120 QRKEQQAQNR RAAASLKQEM KRSSTTTSFH LPPESFVNQP NPYWAPELPV AAVLPVMSYQ 180 THDTQVLHDH QQASIKNMLL KLGGRFSDTT NSMYPIDHIS STSSDQFYQT STIDQLLTCS 240 PPANRNYAQL GQSTTPTMFH GVDRQSNLEA ELSELVYGNS HPHQQLDGLL AGFYQMENLN 300 NGSIAGTSTS AESEISWGDI NSLVYSTTTP IVSDYENNCQ QGVRPPDSAF AESTYFGLK

Sequence ? help Back to Top

Protein Sequence Length: 359 aa Download sequence

MGRAPCCDKT KVKKGPWSPE EDAKLKSYID KQGTGGNWIA LPQKIGLKRC GKSCRLRWLN  60
YLRPNIKHGG FSEEEDNIIC SLYINIGSRW SIIAAQLPGR TDNDIKNYWN TRLKKKLLGK  120
QRKEQQAQNR RAAASLKQEM KRSSTTTSFH LPPESFVNQP NPYWAPELPV AAVLPVMSYQ  180
THDTQVLHDH QQASIKNMLL KLGGRFSDTT NSMYPIDHIS STSSDQFYQT STIDQLLTCS  240
PPANRNYAQL GQSTTPTMFH GVDRQSNLEA ELSELVYGNS HPHQQLDGLL AGFYQMENLN  300
NGSIAGTSTS AESEISWGDI NSLVYSTTTP IVSDYENNCQ QGVRPPDSAF AESTYFGLK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G49690.1	4e-82	MYB family protein