PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro01_G10814

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

Protein Properties

Length: 527aa MW: 59316.9 Da PI: 7.6545

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro01_G10814	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	49.9	5.7e-16	167	240	18	99
--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS B3 18 lpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 lp f+++h +e+++t+tledesg++ + k+i +k++ l++GW++F+ +++L egD++vF+l++ +f +v v+r+ Ro01_G10814 167 LPSLFCKSHL--PEKDITMTLEDESGKQLQSKYIACKTG----LSAGWRQFAASHKLLEGDVLVFQLVEPAKF--KVYVIRS 240 89999995..45889************777776....*********************9875555..8888875 PP

Sequence ? help Back to Top
Protein Sequence Length: 527 aa Download sequence
MGRNVRKQHP EKEDLPKTPP SKEDELSRPT KPKPKPKPIK PAPTPPGNQK KPNKPNEEEV 60 QFSLPMKELS NTQMLEQAAL GHAGKSTPTS TQYDFPIDGS PSRGQAKSSA IIRAQEVRSK 120 LDPQFPSFVK SLLRSHVASC FWMVTSLKLD ECDKIGHGWS GIYIHGLPSL FCKSHLPEKD 180 ITMTLEDESG KQLQSKYIAC KTGLSAGWRQ FAASHKLLEG DVLVFQLVEP AKFKVYVIRS 240 NDFTEVDGGL GILNLEAQTK QNDAGMFINV SVYFFIVSCI ILEDKDNAET GAVACHECNR 300 KRAKSPPLVV QKKKKMDLPA EHSENDSEEV DSEVVESYRL PGTALQFEDI KGFENFSILV 360 NGLLVDSEFP EDIRRKYYKL CCSQNAFLHE NVLKGTNYKL IVGAIVEIVN IVDAIKACKL 420 TTTQEDFVCW DKYLRAFELL GMNVGFIRAR LCRLANLAFD SEDAMDAKIY KEARKERARA 480 GLGIRNIETR IQELREACHE FSSAIESLRS KAEVYTHRFK EEVTAPW

Sequence ? help Back to Top

Protein Sequence Length: 527 aa Download sequence

MGRNVRKQHP EKEDLPKTPP SKEDELSRPT KPKPKPKPIK PAPTPPGNQK KPNKPNEEEV  60
QFSLPMKELS NTQMLEQAAL GHAGKSTPTS TQYDFPIDGS PSRGQAKSSA IIRAQEVRSK  120
LDPQFPSFVK SLLRSHVASC FWMVTSLKLD ECDKIGHGWS GIYIHGLPSL FCKSHLPEKD  180
ITMTLEDESG KQLQSKYIAC KTGLSAGWRQ FAASHKLLEG DVLVFQLVEP AKFKVYVIRS  240
NDFTEVDGGL GILNLEAQTK QNDAGMFINV SVYFFIVSCI ILEDKDNAET GAVACHECNR  300
KRAKSPPLVV QKKKKMDLPA EHSENDSEEV DSEVVESYRL PGTALQFEDI KGFENFSILV  360
NGLLVDSEFP EDIRRKYYKL CCSQNAFLHE NVLKGTNYKL IVGAIVEIVN IVDAIKACKL  420
TTTQEDFVCW DKYLRAFELL GMNVGFIRAR LCRLANLAFD SEDAMDAKIY KEARKERARA  480
GLGIRNIETR IQELREACHE FSSAIESLRS KAEVYTHRFK EEVTAPW

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	300	315	RKRAKSPPLVVQKKKK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G19184.1	8e-33	B3 family protein