PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Ro01_G10806 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
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Family | ERF | ||||||||
Protein Properties | Length: 148aa MW: 17199.4 Da PI: 10.7131 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 63.7 | 3.8e-20 | 5 | 54 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr+++ +g+W+AeI+dp + +r++lg+f taeeAa+a+++a+ +++g Ro01_G10806 5 KYRGVRQRP-WGKWAAEIQDP-----HrkARVWLGTFQTAEEAARAYDKAAVEFRG 54 8********.**********6.....236**********************99987 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 148 aa Download sequence |
MKKGKYRGVR QRPWGKWAAE IQDPHRKARV WLGTFQTAEE AARAYDKAAV EFRGDKAKIN 60 FPLNTSDHDN TGFFNNMSVW NGVKLYEVTL YSDDKRHGKK QNHDLTLKLL YRETQLRAPW 120 RNGRGSCLKL PDARGFRDGL GHRDKHTS |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G50080.1 | 9e-23 | ERF family protein |