PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro01_G05072
Organism
Rubus occidentalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family RAV
Protein Properties Length: 409aa    MW: 46775.8 Da    PI: 7.8211
Description RAV family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro01_G05072genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP232.71.9e-10105153155
          AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                  +++kGV     +g W A+I+       +  r++lg+f ++ eAa a++ a+ kl++
  Ro01_G05072 105 TKFKGVVLQQ-NGHWGAQIYA------NhNRVWLGTFNSEVEAAMAYDSAAIKLRN 153
                  699***9877.8******999......44**********99*************97 PP
2B384.59.7e-27236337189
                  EEEE-..-HHHHTT-EE--HHH.HTT............---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS
           B3   1 ffkvltpsdvlksgrlvlpkkfaeeh............ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldg 86 
                  f+k+ltpsdv+k++rlv+pk++a+++            +++++ +++l+++de+ r W+++++y+k+s+++v+t+GW++Fvk+  Lk++D+v F+  +
  Ro01_G05072 236 FQKELTPSDVGKLNRLVIPKNYATKYfprideamqgglENNPAADVQLVFYDENMRPWKFRYCYWKSSQSFVFTRGWNRFVKERLLKANDTVRFYECH 333
                  99**********************************9999999****************************************************556 PP

                  S.SE CS
           B3  87 r.se 89 
                  + ++
  Ro01_G05072 334 NkDS 337
                  5344 PP
Sequence ? help Back to Top
Protein Sequence    Length: 409 aa     Download sequence    
METTHSYSFG ADFNIFSTII EICIGAKVTL YGTATDFFIC VRLIRLARMA MEMEEDLSSM  60
VSSAGSTRRR KRKYQASVSS LTSITGYFVQ ESKHVSHETS LSASTKFKGV VLQQNGHWGA  120
QIYANHNRVW LGTFNSEVEA AMAYDSAAIK LRNGECQRNF AWTKETDQEP YFQNLHSQEA  180
VLTMIKDGSY QARFFEFLMT RQAADNVQQV EVVAGSNINS ARIQQSNGDV LHKQLFQKEL  240
TPSDVGKLNR LVIPKNYATK YFPRIDEAMQ GGLENNPAAD VQLVFYDENM RPWKFRYCYW  300
KSSQSFVFTR GWNRFVKERL LKANDTVRFY ECHNKDSFYR ITIDRAESSG GIVENANQCV  360
SLSPITLHDK KFEEENKPQV IDQVPQVNGG HGECRRIKLF GVYIVVDED
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G51120.12e-88RAV family protein