PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro01_G04239
Organism
Rubus occidentalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family GRAS
Protein Properties Length: 507aa    MW: 56940.8 Da    PI: 5.2262
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro01_G04239genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS349.55.4e-1071255063374
         GRAS   3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNq 100
                  +lLle A+a+++++ +++q+l++ l+el sp+gd+ q+la+yf++AL +r+++s++++y++l + ++++ + +++ +++  f+evsP+ +f+h+++N 
  Ro01_G04239 125 DLLLETARAIADKNSARVQQLMWMLNELGSPYGDTDQKLASYFLQALFSRMTDSGDRCYRTLVSASEKTCSFESTRKMVLKFQEVSPWTTFGHVACNG 222
                  68************************************************************8777775554444455556***************** PP

         GRAS 101 aIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg........skeeleetgerLakfAeelgvpfefnvlvak.rledl 189
                  aI+ea++ge ++Hi+D++ ++++QWp+Ll+aLa+R++++p+lR+T ++ +++g         ++ ++e+g r++kfA+ +gvpf+fn++ ++ +l+dl
  Ro01_G04239 223 AIMEAFDGEAKLHIVDISNTYCTQWPTLLEALATRTDETPHLRLTSIVVSRAGdgsagvgaTQKVMKEIGARMEKFARLMGVPFKFNAIQHSgDLADL 320
                  ***********************************************9988889999***999**************************6666***** PP

         GRAS 190 eleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnse....sFlerflealeyysalfdsleaklpreseeri 283
                  +l +L+v+ +Eala+n+v +lh+++    ++ ++rd ++++++sl+P++++vve+ead++ +    +F+++f e+l+++ + f++l+++++r+s+er 
  Ro01_G04239 321 NLADLDVRDDEALAINCVGSLHSIV----AVGNRRDYLISAFRSLRPRIITVVEEEADLDVGvdgfDFVQGFQECLRWFRVYFEALDESFARTSNERL 414
                  ************************8....8888999********************99865556669******************************* PP

         GRAS 284 kvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrve...eesgslvlgWkdrpLvsvSaWr 374
                  ++Er+  gr++v++vac+  +++er+et+ +W++r++ aGF+pv++s+++ +++++llr++k +g+ +    ++ + ++l Wkd+++v++SaWr
  Ro01_G04239 415 MLERA-AGRAVVDLVACAPPDSVERRETATRWSRRMHGAGFSPVTFSDEVCDDVRALLRRYK-EGWAMTqcgDSVAGIFLSWKDQSVVWASAWR 506
                  *****.********************************************************.6666553335567778**************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 507 aa     Download sequence    
MDTLFRLVTL QQQQQQQQQS DQSFNSSTRT TTTTSSSSRS FTHHPQNHHH YPQQNDVEEC  60
FNFFMDEEDF SSSSSKAHYY PTPPTPTPPP PLITTTTTPT PTDFSFSPAH DLANFEFSSP  120
KWAPDLLLET ARAIADKNSA RVQQLMWMLN ELGSPYGDTD QKLASYFLQA LFSRMTDSGD  180
RCYRTLVSAS EKTCSFESTR KMVLKFQEVS PWTTFGHVAC NGAIMEAFDG EAKLHIVDIS  240
NTYCTQWPTL LEALATRTDE TPHLRLTSIV VSRAGDGSAG VGATQKVMKE IGARMEKFAR  300
LMGVPFKFNA IQHSGDLADL NLADLDVRDD EALAINCVGS LHSIVAVGNR RDYLISAFRS  360
LRPRIITVVE EEADLDVGVD GFDFVQGFQE CLRWFRVYFE ALDESFARTS NERLMLERAA  420
GRAVVDLVAC APPDSVERRE TATRWSRRMH GAGFSPVTFS DEVCDDVRAL LRRYKEGWAM  480
TQCGDSVAGI FLSWKDQSVV WASAWRP
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37650.10.0GRAS family protein