PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro01_G04177

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

C2H2

Protein Properties

Length: 358aa MW: 39836.7 Da PI: 10.0849

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro01_G04177	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	11.1	0.0013	44	66	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ C++ F ++ L H++ H Ro01_G04177 44 FSCNFCTRKFYSSQALGGHQNAH 66 89*****************9988 PP

Sequence ? help Back to Top
Protein Sequence Length: 358 aa Download sequence
MIFNQDSESK QSDHEDDNLG DLLSLSLNKN DPSSKPGSSS HMVFSCNFCT RKFYSSQALG 60 GHQNAHKRER GAAKRYRSHR MLMSTMRFPF NSVALGVQPH SLVQKQSSRD GSSMMMPSFS 120 TGFRMPFMFE ETMDLMIWPG SFQVENKLPS TTTQDQSDHA HNTQLDLSLR LYTLVLLFGL 180 SLSPPSPVHD IFLLLLTVAG AATTTGHPRT SPPPPKVAAC SGYPSHRSGT VASGCPFCKG 240 ILVSSAYAPG KFGGIFPEEK IPNQKVKRDK NTMLNALRKI FKPMKKDLVL LFVWIAFLLS 300 KCLNLTRHSA PQQEFAIWTH WSANLSSHFE RLKSVGISLK SCCNPQSALS FRNHDHKA

Sequence ? help Back to Top

Protein Sequence Length: 358 aa Download sequence

MIFNQDSESK QSDHEDDNLG DLLSLSLNKN DPSSKPGSSS HMVFSCNFCT RKFYSSQALG  60
GHQNAHKRER GAAKRYRSHR MLMSTMRFPF NSVALGVQPH SLVQKQSSRD GSSMMMPSFS  120
TGFRMPFMFE ETMDLMIWPG SFQVENKLPS TTTQDQSDHA HNTQLDLSLR LYTLVLLFGL  180
SLSPPSPVHD IFLLLLTVAG AATTTGHPRT SPPPPKVAAC SGYPSHRSGT VASGCPFCKG  240
ILVSSAYAPG KFGGIFPEEK IPNQKVKRDK NTMLNALRKI FKPMKKDLVL LFVWIAFLLS  300
KCLNLTRHSA PQQEFAIWTH WSANLSSHFE RLKSVGISLK SCCNPQSALS FRNHDHKA

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G24625.1	1e-16	C2H2 family protein